[Objective] This study aimed to optimize the SCoT-PCR system for Citrus.Under the optimized SCoT-PCR amplification conditions, the genetic DNA of Youzishatangju and Wuzishatangju were amplified. [Method] Orthogonal de...[Objective] This study aimed to optimize the SCoT-PCR system for Citrus.Under the optimized SCoT-PCR amplification conditions, the genetic DNA of Youzishatangju and Wuzishatangju were amplified. [Method] Orthogonal design was adopted to optimize the five influencing factors on amplification effect of SCoT-PCR,including the DNA template, Mg2＋, primers, dNTPs and Taq DNA polymerse concentrations. With the optimized SCoT-PCR system, the genomic DNA of Youzishatangju and Wuzishatangju were amplified by 60 SCoT primers, respectively, and the specific bands for Youzishatangju or Wuzishatangju were selected for SCAR transformation. [Result] The optimized SCoT-PCR reaction system（20 μl） was as follows： Mg2＋1.5 mmol/L, d NTPs 0.35 mmol/L, primer 0.25 μmol/L, Taq enzyme 0.5 U, DNA template 30 ng. The optimum annealing temperature was 50.6 °C. With the optimized SCoT-PCR system, the genomic DNA of Youzishatangju and Wuzishatangju were amplified respectively by 60 SCoT primers, and a total of 42 pairs of primers were screened. Among the 42 pairs of primers, only one primer amplified different band pattern between Youzishatangju and Wuzishatangju. [Conclusion] It indicates that there is certain difference between Youzishatangju and Wuzishatangju at genomic DNA level.展开更多
文摘目标起始密码子多态性(Start condon targeted polymorphism,SCoT)分子标记是一种新型的标记,结合了ISSR标记和RAPD标记的优点.本研究针对SCoT-PCR反应体系的影响因素,以甘蔗叶片DNA为材料,在单因子实验的基础上,采用L16(45)正交实验设计,进一步探讨了模板DNA、Mg2+、dNTPs、引物及Taq酶等5个因素对甘蔗SCoT-PCR扩增效果的影响,建立了甘蔗SCoT-PCR的优化反应体系.25μL PCR反应混合液中,含50 ng DNA模板、2.0μL 10×Ex Taq Buffer(Mg2+Plus)、0.625 U Ex Taq酶,dNTP和引物的终浓度分别为0.22 mmol/L和0.9μmol/L.以我国种植面积最大的栽培品种新台糖22号为模板,应用优化体系,对40条SCoT标记引物进行测试,筛选出16条有效扩增的引物,且均为多态性引物,其GC含量在50%～67%之间.该体系的稳定性和SCoT标记引物的扩增能力,通过基于随机选择的4条引物对9份具有地理来源和遗传背景不同的甘蔗种质进行标记分析来验证,结果共扩增出84条带,其中多态性条带占82.14%,平均单条引物可扩增出21条.研究结果为在甘蔗上进一步开发和应用功能性SCoT标记奠定了基础.
基金Supported by Foundation for Distinguished Young Talents in Higher Education of Guangdong,China(2012LM0135)Scientific and Technological Innovation Project of Zhaoqing City,Guangdong Province(2012G21)Guangdong Provincial Natural Science Foundation(S2013010015195)~~
文摘[Objective] This study aimed to optimize the SCoT-PCR system for Citrus.Under the optimized SCoT-PCR amplification conditions, the genetic DNA of Youzishatangju and Wuzishatangju were amplified. [Method] Orthogonal design was adopted to optimize the five influencing factors on amplification effect of SCoT-PCR,including the DNA template, Mg2＋, primers, dNTPs and Taq DNA polymerse concentrations. With the optimized SCoT-PCR system, the genomic DNA of Youzishatangju and Wuzishatangju were amplified by 60 SCoT primers, respectively, and the specific bands for Youzishatangju or Wuzishatangju were selected for SCAR transformation. [Result] The optimized SCoT-PCR reaction system（20 μl） was as follows： Mg2＋1.5 mmol/L, d NTPs 0.35 mmol/L, primer 0.25 μmol/L, Taq enzyme 0.5 U, DNA template 30 ng. The optimum annealing temperature was 50.6 °C. With the optimized SCoT-PCR system, the genomic DNA of Youzishatangju and Wuzishatangju were amplified respectively by 60 SCoT primers, and a total of 42 pairs of primers were screened. Among the 42 pairs of primers, only one primer amplified different band pattern between Youzishatangju and Wuzishatangju. [Conclusion] It indicates that there is certain difference between Youzishatangju and Wuzishatangju at genomic DNA level.
