期刊文献+

基因自调控环路的功能 被引量:2

Functions of Gene Autoregulatory Circuits
原文传递
导出
摘要 作为最简单且最典型的网络模块,基因自调控环路(其构成的反馈调控可以抑制或激活基因自身的表达)广泛存在于生物调控网络中,且是许多生物学功能的产生基础。虽然基因自调控环路很早以前便引起理论生物学家和实验生物学家的广泛关注,但随着对其生物学功能了解的日趋丰富,特别是当考虑细化的基因表达调控过程或更为真实的生物环境时,我们会发现其全新的生物学功能。揭示基因自调控环路的生物学功能是理解更复杂生物调控网络运行机制的基础,可对合成生物学的设计原理提供指导。文章综述了基因自调控模块的最新研究结果,特别讨论了其产生周期振动、双稳及其在信号处理等方面的潜能。 Typical and the simplest network architectures in biological networks, gene autoregulatory circuits, where their constitutive feedback regulation may repress or actuate the expression of the gene itself, exist widely in gene regulatory networks, and are the basis of many biological functions. Such regulatory circuits received extensive attention from theoretical and experimental biologists some time ago, but only now their biological functions are gradually revealed. In particular, such autoregulatory circuits exhibit novel biological functions when detailed biological processes and new biological factors are considered. This paper systematically reviews the latest data on biological functions of gene autoregulatory motifs, and explores their potentials to generate oscillation and bistability, and the ability to process signals. Uncovering the functions of autoregulatory motifs is the basis and the first step of understanding mechanisms of more complex biological networks, and also provides guidance for design principles in synthetic biology.
出处 《生物物理学报》 CAS CSCD 北大核心 2010年第6期457-471,共15页 Acta Biophysica Sinica
基金 国家自然科学基金重点项目(60736028)和面上项目(30973980)~~
关键词 网络模块 自调控环路 刺激-响应关系 振动性 双稳性 Network motif Autoregulatory circuit Stimulus-response relation Oscillation Bistability
  • 相关文献

参考文献79

  • 1Thieffry D, Huerta AM, Perez-Rueda E, Collado-Vides J. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coil Bioessays, 1998, 20:433-440. 被引量:1
  • 2Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coll Nature Genet, 2002, 31:64-68. 被引量:1
  • 3Brian C, Olshaker JS. The C-reactive protein. J Emerg Med, 2003, 17:1019-1025. 被引量:1
  • 4Cirz RT, Chin JK, Andes DR, de Crecy-Lagard V, Craig WA, Romesberg FE. Inhibition of mutation and combating the evolution of antibiotic resistance. PLoS Biol, 2005, 3: e 176. 被引量:1
  • 5Becskei A, Seraphin B, Serrano L. Positive feedback in eukaryotic gene networks: coil differentiation by graded to binary response conversion. EMBO J, 2001, 20: 2528-2535. 被引量:1
  • 6Becskei A, Serrano L. Engineering stability in gene networks by autoregulation. Nature, 2000, 405:590-593. 被引量:1
  • 7Nevozhay D, Adams RM, Murphy KF, Josic K, Balazsi G. Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci USA, 2009, 106:5123-5128. 被引量:1
  • 8Meredith A, Johnson JE. Negative autoregulation of Mash1 expression in CNS development. Dev Biol, 2000, 222: 336-346. 被引量:1
  • 9Auemhammer C J, Bousquet C, Melmed S, Autoregulation of pituitary corticotroph SOCS-3 expression: characterization of the murine SOCS-3 promoter. Proc Natl Acad Sci USA, 1999, 96:6964-6969. 被引量:1
  • 10Gon S, Joudin-Castelli C, Theraulaz L, Mejean V. An unsuspected autoregulatory pathway involving apocytochrome TorC and sensor TorS in Escherichia coli. Proc Natl Acad Sci USA, 2001, 98:11615-11620. 被引量:1

同被引文献42

  • 1Blake W J, K:rn M, Collins J J. Noise in eukaryotic gene ex- pression [J]. Nature, 2003, 422: 633-637. 被引量:1
  • 2Raser J, O'Shea E. Control of stochasticity in eukaryotic gene expression [J]. Science, 2003, 304:1811-1814. 被引量:1
  • 3Boeger H, (3riesenbeck J, Komberg R D. Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription [J]. Cell, 2008, 133: 716-726. 被引量:1
  • 4Larson D R. What do expression dynamics tell us about the mechanism of transcription? [J]. Curr Opin Ganet Dev, 2011, 21: 591-599. 被引量:1
  • 5Chubb J R, Trcek T, Singer R H. Transcriptional pulsing of a de- velopmantal gene [J]. Curt Biol, 2006, 16: 1018-1025. 被引量:1
  • 6Pedraza J M, Paulsson J. Effects of molecular memory andbursting on fluctuations in gone expression [J]. Science, 2008, 319: 339-343. 被引量:1
  • 7S:nchez A, Kondev J. Transcriptional control of noise in gene expression [J]. Proc Natl Acad Sci U S A, 2008, 105: 5081-5086. 被引量:1
  • 8Sanchez A, Garcia H C: Kondev J. Effect of promoter architec- ture on the cell-to-cell variability in gene expression [J]. PLoS Comput Biol, 2011, 7:el001100. 被引量:1
  • 9Mao C, Brown C R, Boeger H. Quantitative analysis of the tran- scription control mechanism [J]. Mol Syst Biol, 2010, 6: 431-438. 被引量:1
  • 10Mariani L, Schulz E G, H6fer T. Short-term memory in gene in- duction reveals the regulatory principle behind stochastic IL-4 expression [J]. Mol Syst Biol, 2010, 6: 359-365. 被引量:1

引证文献2

二级引证文献33

相关作者

内容加载中请稍等...

相关机构

内容加载中请稍等...

相关主题

内容加载中请稍等...

浏览历史

内容加载中请稍等...
;
使用帮助 返回顶部