Due to the hidden nature of roots in the soils, it is more challenging to investigate their resistance traits and defense responses as compared to those of the aerial organs. At the same time, it is self-evident that ...Due to the hidden nature of roots in the soils, it is more challenging to investigate their resistance traits and defense responses as compared to those of the aerial organs. At the same time, it is self-evident that root health is fundamental to a plant’s entire life and productivity. It is also easily conceivable that root function, physiology, morphology, and architecture are constantly impacted by the complex soil environment including both biotic and abiotic factors. This report summarizes and updates the challenges and progress in evaluating resistance responses of apple root to infection from a necrotrophic oomycete pathogen, Pythium ultimum. Several obstacles impede the progress of investigating apple root resistance traits including the difficulties of direct and real-time evaluation and the lack of a continuous supply of apple plants for repeated infection assays. Systematic and detailed analyses were made possible by implementing a micropropagation procedure for continuously generating uniform apple plants for repeated infection assays. As a result, an elite panel of apple rootstock germplasm with distinct resistance levels was identified. These apple rootstock genotypes with well-defined resistance levels are the much-needed plant materials for subsequent genomics and transgenics analyses to define the functional roles of specific candidate genes. Careful microscopic examination revealed contrasting necrosis progression patterns between resistant and susceptible genotypes, which shed light on the potential mechanisms underlying resistance traits. Our continuing research will provide a clearer view regarding the genetic elements regulating resistance traits in apple roots to P. ultimum infection.展开更多
Assessment of individual costs of the anti-predator defence translating into changes in population parameters is meagre.This is because prey responses are likely to be modulated by additional factors,commonly present ...Assessment of individual costs of the anti-predator defence translating into changes in population parameters is meagre.This is because prey responses are likely to be modulated by additional factors,commonly present in the environment,but often neglected in experimental studies.To evaluate the effect of external factors on prey behavior and physiology,we exposed amphipods Dikerogammarus villosus and Gammarus jazdzewskii to the predation cue of Perca fluviatilis in different densities and light conditions.Singletons of both species exposed to the predation cue in light modified their oxygen consumption(D.villosus:reduction,G.jadzewskii:increase)compared to their respiration in predator-free conditions.However,in the presence of conspecifics or in darkness,their respiration became insensitive to the predation cue.On the other hand,the swimming activity of prey was reduced in the presence of the predation cue irrespective of prey density and light conditions,but singletons were consistently more active than groups.Thus,external factors,such as conspecifics and darkness,constantly or periodically occurring in the field,may reduce the costs of predator non-consumptive effects compared to the costs measured under laboratory conditions(in light or absence of conspecifics).Moreover,we showed that behavioral and physiological parameters of prey may change differently in response to predation risk.Thus,conclusions drawn on the basis of single defence mechanisms and/or results obtained in artificial conditions,not reflecting the environmental complexity,strongly depend on the experimental design and endpoint selection and therefore should be treated with care.展开更多
Circadian clocks are endogenous timers that enable plants to synchronize biological processes with daily and seasonal environmental conditions in order to allocate resources during the most beneficial times of day and...Circadian clocks are endogenous timers that enable plants to synchronize biological processes with daily and seasonal environmental conditions in order to allocate resources during the most beneficial times of day and year. The circadian clock regulates a number of central plant activities, including growth, develop- ment, and reproduction, primarily through controlling a substantial proportion of transcriptional activity and protein function. This review examines the roles that alleles of circadian clock genes have played in domestication and improvement of crop plants. The focus here is on three groups of circadian clock genes essential to clock function in Arabidopsis thaliana： PSEUDO-RESPONSE REGULATORs, GIGANTEA, and the evening complex genes EARL Y FLOWERING 3, EARLY FLOWERING 4, and LUX ARRHYTHMO. Homol- ogous genes from each group underlie quantitative trait loci that have beneficial influences on key agricul- tural traits, especially flowering time but also yield, biomass, and biennial growth habit. Emerging insights into circadian clock regulation of other fundamental plant processes, including responses to abiotic and biotic stresses, are discussed to highlight promising avenues for further crop improvement.展开更多
Understanding how plants respond to drought can benefit drought resistance （DR） breeding. Using a non-destructive phenotyping facility, 51 image-based traits （i-traits） for 507 rice accessions were extracted. Thes...Understanding how plants respond to drought can benefit drought resistance （DR） breeding. Using a non-destructive phenotyping facility, 51 image-based traits （i-traits） for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability and large variation of these traits was observed under drought stress in the natural population. A genome-wide as- sociation study （GWAS） of i-traits and traditional DR traits identified 470 association loci, some containing known DR-related genes. Of these 470 loci, 443 loci （94%） were identified using i-traits, 437 loci （93%） co- localized with previously reported DR-related quantitative trait loci, and 313 loci （66.6%） were reproducibly identified by GWAS in different years. Association networks, established based on GWAS results, revealed hub i-traits and hub loci. This demonstrates the feasibility and necessity of dissecting the complex DR trait into heritable and simple i-traits. As proof of principle, we illustrated the power of this integrated approach to identify previously unreported DR-related genes. OsPP15 was associated with a hub i-trait, and its role in DR was confirmed by genetic transformation experiments. Furthermore, i-traits can be used for DR linkage analyses, and 69 i-trait locus associations were identified by both GWAS and linkage analysis of a recom- binant inbred line population. Finally, we confirmed the relevance of i-traits to DR in the field. Our study pro- vides a promising novel approach for the genetic dissection and discovery of causal genes for DR.展开更多
文摘Due to the hidden nature of roots in the soils, it is more challenging to investigate their resistance traits and defense responses as compared to those of the aerial organs. At the same time, it is self-evident that root health is fundamental to a plant’s entire life and productivity. It is also easily conceivable that root function, physiology, morphology, and architecture are constantly impacted by the complex soil environment including both biotic and abiotic factors. This report summarizes and updates the challenges and progress in evaluating resistance responses of apple root to infection from a necrotrophic oomycete pathogen, Pythium ultimum. Several obstacles impede the progress of investigating apple root resistance traits including the difficulties of direct and real-time evaluation and the lack of a continuous supply of apple plants for repeated infection assays. Systematic and detailed analyses were made possible by implementing a micropropagation procedure for continuously generating uniform apple plants for repeated infection assays. As a result, an elite panel of apple rootstock germplasm with distinct resistance levels was identified. These apple rootstock genotypes with well-defined resistance levels are the much-needed plant materials for subsequent genomics and transgenics analyses to define the functional roles of specific candidate genes. Careful microscopic examination revealed contrasting necrosis progression patterns between resistant and susceptible genotypes, which shed light on the potential mechanisms underlying resistance traits. Our continuing research will provide a clearer view regarding the genetic elements regulating resistance traits in apple roots to P. ultimum infection.
基金Our study was supported by the grants of the National Science Centre,Poland No.2016/21/B/NZ8/00418 and 2020/39/D/NZ8/01226.
文摘Assessment of individual costs of the anti-predator defence translating into changes in population parameters is meagre.This is because prey responses are likely to be modulated by additional factors,commonly present in the environment,but often neglected in experimental studies.To evaluate the effect of external factors on prey behavior and physiology,we exposed amphipods Dikerogammarus villosus and Gammarus jazdzewskii to the predation cue of Perca fluviatilis in different densities and light conditions.Singletons of both species exposed to the predation cue in light modified their oxygen consumption(D.villosus:reduction,G.jadzewskii:increase)compared to their respiration in predator-free conditions.However,in the presence of conspecifics or in darkness,their respiration became insensitive to the predation cue.On the other hand,the swimming activity of prey was reduced in the presence of the predation cue irrespective of prey density and light conditions,but singletons were consistently more active than groups.Thus,external factors,such as conspecifics and darkness,constantly or periodically occurring in the field,may reduce the costs of predator non-consumptive effects compared to the costs measured under laboratory conditions(in light or absence of conspecifics).Moreover,we showed that behavioral and physiological parameters of prey may change differently in response to predation risk.Thus,conclusions drawn on the basis of single defence mechanisms and/or results obtained in artificial conditions,not reflecting the environmental complexity,strongly depend on the experimental design and endpoint selection and therefore should be treated with care.
文摘Circadian clocks are endogenous timers that enable plants to synchronize biological processes with daily and seasonal environmental conditions in order to allocate resources during the most beneficial times of day and year. The circadian clock regulates a number of central plant activities, including growth, develop- ment, and reproduction, primarily through controlling a substantial proportion of transcriptional activity and protein function. This review examines the roles that alleles of circadian clock genes have played in domestication and improvement of crop plants. The focus here is on three groups of circadian clock genes essential to clock function in Arabidopsis thaliana： PSEUDO-RESPONSE REGULATORs, GIGANTEA, and the evening complex genes EARL Y FLOWERING 3, EARLY FLOWERING 4, and LUX ARRHYTHMO. Homol- ogous genes from each group underlie quantitative trait loci that have beneficial influences on key agricul- tural traits, especially flowering time but also yield, biomass, and biennial growth habit. Emerging insights into circadian clock regulation of other fundamental plant processes, including responses to abiotic and biotic stresses, are discussed to highlight promising avenues for further crop improvement.
基金We thank the National Key Research and Development Program of China （2016YFD0100600, 2016YFD0100101-18）, the National Program on High Technology Development （2014AA10A600）, the National Natural Science Foundation of China （31770397）, and the Fundamental Research Funds for the Central Universities （2662015PY126, 2662016PY0092, 662017PY058）. We also thank Prof. John Doonan of Aberystwyth University for the English language improvement.
文摘Understanding how plants respond to drought can benefit drought resistance （DR） breeding. Using a non-destructive phenotyping facility, 51 image-based traits （i-traits） for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability and large variation of these traits was observed under drought stress in the natural population. A genome-wide as- sociation study （GWAS） of i-traits and traditional DR traits identified 470 association loci, some containing known DR-related genes. Of these 470 loci, 443 loci （94%） were identified using i-traits, 437 loci （93%） co- localized with previously reported DR-related quantitative trait loci, and 313 loci （66.6%） were reproducibly identified by GWAS in different years. Association networks, established based on GWAS results, revealed hub i-traits and hub loci. This demonstrates the feasibility and necessity of dissecting the complex DR trait into heritable and simple i-traits. As proof of principle, we illustrated the power of this integrated approach to identify previously unreported DR-related genes. OsPP15 was associated with a hub i-trait, and its role in DR was confirmed by genetic transformation experiments. Furthermore, i-traits can be used for DR linkage analyses, and 69 i-trait locus associations were identified by both GWAS and linkage analysis of a recom- binant inbred line population. Finally, we confirmed the relevance of i-traits to DR in the field. Our study pro- vides a promising novel approach for the genetic dissection and discovery of causal genes for DR.
