The prediction of molecular properties is a crucial task in the field of drug discovery.Computational methods that can accurately predict molecular properties can significantly accelerate the drug discovery process an...The prediction of molecular properties is a crucial task in the field of drug discovery.Computational methods that can accurately predict molecular properties can significantly accelerate the drug discovery process and reduce the cost of drug discovery.In recent years,iterative updates in computing hardware and the rise of deep learning have created a new and effective path for molecular property prediction.Deep learning methods can leverage the vast amount of data accumulated over the years in drug discovery and do not require complex feature engineering.in this review,we summarize molecular representations and commonly used datasets in molecular property prediction models and present advanced deep learning methods for molecular property prediction,including state-of-the-art deep learning networks such as graph neural networks and Transformer-based models,as well as state-of-the-art deep learning strategies such as 3D pre-train,contrastive learning,multi-task learning,transfer learning,and meta-learning.We also point out some critical issues such as lack of datasets,low information utilization,and lack of specificity for diseases.展开更多
基金National Natural Science Foundation of China,Grant/Award Number:62071278Macao PolytechnicUniversity,Grant/Award Numbers:RP/FCSD-01/2022,RP/FCSD-02/2022。
文摘The prediction of molecular properties is a crucial task in the field of drug discovery.Computational methods that can accurately predict molecular properties can significantly accelerate the drug discovery process and reduce the cost of drug discovery.In recent years,iterative updates in computing hardware and the rise of deep learning have created a new and effective path for molecular property prediction.Deep learning methods can leverage the vast amount of data accumulated over the years in drug discovery and do not require complex feature engineering.in this review,we summarize molecular representations and commonly used datasets in molecular property prediction models and present advanced deep learning methods for molecular property prediction,including state-of-the-art deep learning networks such as graph neural networks and Transformer-based models,as well as state-of-the-art deep learning strategies such as 3D pre-train,contrastive learning,multi-task learning,transfer learning,and meta-learning.We also point out some critical issues such as lack of datasets,low information utilization,and lack of specificity for diseases.
基金supported by the National Key Research and Development Program of China(No.2017YFA0204904)the Fundamental Research Funds for the Central Universities,China(No.WK3510000013)the National Natural Science Foundation of China(No.61922073).
