Chinese medicine(CM) is usually prescribed as CM formula to treat disease. The lack of effective research approach makes it difficult to elucidate the molecular mechanisms of CM formula owing to its complicated chemic...Chinese medicine(CM) is usually prescribed as CM formula to treat disease. The lack of effective research approach makes it difficult to elucidate the molecular mechanisms of CM formula owing to its complicated chemical compounds. Network pharmacology is increasingly applied in CM formula research in recent years, which is identified suitable for the study of CM formula. In this review, we summarized the methodology of network pharmacology, including network construction, network analysis and network verification. The aim of constructing a network is to achieve the interaction between the bioactive compounds and targets and the interaction between various targets, and then find out and validate the key nodes via network analysis and network verification. Besides, we reviewed the application in CM formula research, mainly including targets discovery, bioactive compounds screening, toxicity evaluation, mechanism research and quality control research. Finally, we proposed prospective in the future and limitations of network pharmacology, expecting to provide new strategy and thinking on study for CM formula.展开更多
In the present study, the physical meaning of vorticity is revisited based on the Liutex-Shear (RS) decomposition proposed by Liu et al. in the framework of Liutex (previously called Rortex), a vortex vector field wit...In the present study, the physical meaning of vorticity is revisited based on the Liutex-Shear (RS) decomposition proposed by Liu et al. in the framework of Liutex (previously called Rortex), a vortex vector field with information of both rotation axis and swirling strength (Liu et al. 2018). It is demonstrated that the vorticity in the direction of rotational axis is twice the spatial mean angular velocity in the small neighborhood around the considered point while the imaginary part of the complex eigenvalue (2c.) of the velocity gradient tensor (if exist) is the pseudo-time average angular velocity of a trajectory moving circularly or spirally around the axis. In addition, an explicit expression of the Liutex vector in terms of the eigenvalues and eigenvectors of velocity gradient is obtained for the first time from above understanding, which can further, though mildly, accelerate the calculation and give more physical comprehension of the Liutex vector.展开更多
Traditional Chinese medicine（TCM） holds a holistic theory, and specializes in balancing disordered human body using numerous natural products, particularly Chinese herbal formulae. TCM has certain treatment advantag...Traditional Chinese medicine（TCM） holds a holistic theory, and specializes in balancing disordered human body using numerous natural products, particularly Chinese herbal formulae. TCM has certain treatment advantages for patients suffering from various complex diseases. However, due to the complex nature of TCM, it remains difficult to unveil such holistic medicine by the current reductionism research strategies, which treat both herbal ingredients and targets in isolation. Recently, an emerging network pharmacology approach has been introduced to tackle this bottleneck problem. A TCM-derived novel therapeutic concept, ＂network target＂, which is different from the Western medicine＇s ＂onetarget＂ concept, has been proposed from China. The network target strategy is able to illustrate the complex interactions among the biological systems, drugs, and complex diseases from a network perspective, and thus provides an innovative approach to access ancient remedies in a precision manner and at a systematic level, which also highlights TCM＇s potential in current medical systems.展开更多
基金Supported by the National Natural Science Foundation of China(No.81530102)Guangdong Provincial Science and Technology Agency Special Funds(No.2017B050504005)Guangzhou City Science and Technology Agency Special Funds(No.201803010069)
文摘Chinese medicine(CM) is usually prescribed as CM formula to treat disease. The lack of effective research approach makes it difficult to elucidate the molecular mechanisms of CM formula owing to its complicated chemical compounds. Network pharmacology is increasingly applied in CM formula research in recent years, which is identified suitable for the study of CM formula. In this review, we summarized the methodology of network pharmacology, including network construction, network analysis and network verification. The aim of constructing a network is to achieve the interaction between the bioactive compounds and targets and the interaction between various targets, and then find out and validate the key nodes via network analysis and network verification. Besides, we reviewed the application in CM formula research, mainly including targets discovery, bioactive compounds screening, toxicity evaluation, mechanism research and quality control research. Finally, we proposed prospective in the future and limitations of network pharmacology, expecting to provide new strategy and thinking on study for CM formula.
基金supported by the National Nature Science Foundation of China (Grant Nos. 11702159, 91530325).
文摘In the present study, the physical meaning of vorticity is revisited based on the Liutex-Shear (RS) decomposition proposed by Liu et al. in the framework of Liutex (previously called Rortex), a vortex vector field with information of both rotation axis and swirling strength (Liu et al. 2018). It is demonstrated that the vorticity in the direction of rotational axis is twice the spatial mean angular velocity in the small neighborhood around the considered point while the imaginary part of the complex eigenvalue (2c.) of the velocity gradient tensor (if exist) is the pseudo-time average angular velocity of a trajectory moving circularly or spirally around the axis. In addition, an explicit expression of the Liutex vector in terms of the eigenvalues and eigenvectors of velocity gradient is obtained for the first time from above understanding, which can further, though mildly, accelerate the calculation and give more physical comprehension of the Liutex vector.
基金Supported by the National Natural Science Foundation of China(No.81225025 and 91229201)
文摘Traditional Chinese medicine（TCM） holds a holistic theory, and specializes in balancing disordered human body using numerous natural products, particularly Chinese herbal formulae. TCM has certain treatment advantages for patients suffering from various complex diseases. However, due to the complex nature of TCM, it remains difficult to unveil such holistic medicine by the current reductionism research strategies, which treat both herbal ingredients and targets in isolation. Recently, an emerging network pharmacology approach has been introduced to tackle this bottleneck problem. A TCM-derived novel therapeutic concept, ＂network target＂, which is different from the Western medicine＇s ＂onetarget＂ concept, has been proposed from China. The network target strategy is able to illustrate the complex interactions among the biological systems, drugs, and complex diseases from a network perspective, and thus provides an innovative approach to access ancient remedies in a precision manner and at a systematic level, which also highlights TCM＇s potential in current medical systems.
