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Factors predicting occurrence and prognosis of hepatitis-B-virus-related hepatocellular carcinoma 被引量:56
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作者 Yi-Fang Han Jun Zhao +4 位作者 Li-Ye Ma Jian-Hua Yin Wen-Jun Chang Hong-Wei Zhang Guang-Wen Cao 《World Journal of Gastroenterology》 SCIE CAS CSCD 2011年第38期4258-4270,共13页
Primary liver cancer is an important cause of cancer death, and hepatocellular carcinoma (HCC) accounts for 70%-85% of total liver cancer worldwide. Chronic hepatitis B virus (HBV) infection contributes to 〉 75% ... Primary liver cancer is an important cause of cancer death, and hepatocellular carcinoma (HCC) accounts for 70%-85% of total liver cancer worldwide. Chronic hepatitis B virus (HBV) infection contributes to 〉 75% of HCC cases. High serum viral load is the most reliable indicator of viral replication in predicting development of HCC. HBV genotype C is closely associated with HCC in cirrhotic patients aged 〉 50 years, whereas genotype B is associated with development of HCC in non-cirrhotic young patients and postoperative relapse of HCC. Different HBV subgenotypes have distinct patterns of mutations, which are clearly associated with increased risk of HCC. Mutations accumulate during chronic HBV infection and predict occurrence of HCC. Chronic inflammation leads to increased frequency of viral mutation via cellular cytidine deaminase induction. Mutations are negatively selected by host immunity, whereas some immuno-escaped HBV mutants are active in hepatocarcinogenesis. Inflammatory pathways contribute to the inflammation-necrosis-regeneration process, ultimately HCC. Their hallmark molecules can predict malignancy in HBV-infected subjects. Continuing inflammation is involved in hepatocarcinogenesis and closely related to recurrence and metastasis. HBV load, genotype C, viral mutations and expression of inflammatory molecules in HBV-related HCC tissues are significantly associated with poor prognosis. Imbalance between intratumoral CD8^+T cells and regulatory T cells or Thl and Th2 cytokines in peritumoral tissues can predict prognosis of HBV-related HCC. These factors are important for developing active prevention and surveillance of HBV-infected subjects who are more likely to develop HCC, or for tailoring suitable treatment to improve survival or postpone postoperative recurrence of HCC. 展开更多
关键词 Hepatitis B virus Hepatocellular carcinoma Viral load genotype Mutation Immune cells Signal-ing pathway CYTOKINE PROGNOSIS
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Clinical relevance and public health significance of hepatitis B virus genomic variations 被引量:54
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作者 Guang-Wen Cao 《World Journal of Gastroenterology》 SCIE CAS CSCD 2009年第46期5761-5769,共9页
Ten hepatitis B virus (HBV) genotypes (A-J) and 34 HBV subgenotypes have been identified so far. HBV genotypes and subgenotypes have distinct geographical distributions, and have been shown to differ with regard t... Ten hepatitis B virus (HBV) genotypes (A-J) and 34 HBV subgenotypes have been identified so far. HBV genotypes and subgenotypes have distinct geographical distributions, and have been shown to differ with regard to clinical outcome, prognosis, and response to interferon treatment. Infection with subgenotype A2 is frequently associated with high viral load, resulting in acute infection via horizontal transmission. Genotypes A and B are more sensitive to interferon treatment than genotypes D and C, respectively. Genotype B is more frequent in acute hepatitis than genotype C, whereas genotype C (C2) is more frequently associated with an increased risk of hepatocellular carcinoma (HCC), mostly cirrhotic, as compared with genotype B (B2). Genotype mixture is associated with high viral load and worse outcome of HBV infection. HBV mutations in the S genes, especially amino acids substitution at position 145 (G145R), are associated with immune escape, whereas mutations in the PreS or S genes which impair HBsAg secretion could present a risk to blood safety. HBV variants harboring mutations in the viral polymerase gene that confer resistance to nucleoside analogs may be selected during antiviral therapy. Different genotypes have distinct mutation patterns in the PreS and EnhH/BCP/Precore regions. PreS deletions, C1653T, T1753V, and A1762T/G1764A are associated with an increased risk of HCC. HCC- associated HBV mutants may not transmit via motherto-child transmission, and are likely generated during HBV-induced pathogenesis. Examination of HBV mutations alone or in combination and host genetic suscep-tibility will be helpful in classifying the HBV-infected subjects who will develop HCC and need active antiviral treatments. 展开更多
关键词 Hepatitis B virus genotype SUBgenotype MUTATION CLINICAL Public health Evolution
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中国境内首次发现输入性D4基因型麻疹病例 被引量:52
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作者 王慧玲 郑蕾 +4 位作者 王骥涛 郜慧 张燕 孔晓慧 许文波 《病毒学报》 CAS CSCD 北大核心 2010年第2期103-108,共6页
本文报道了2009年中国首例输入性D4基因型麻疹病例。使用Vero/SLAM细胞(淋巴信号激活因子转染的非洲绿猴肾细胞)对该麻疹病例的咽拭子标本进行麻疹病毒分离,经逆转录聚合酶链反应(Reverse transcript polymerase chain reaction,RT-PCR... 本文报道了2009年中国首例输入性D4基因型麻疹病例。使用Vero/SLAM细胞(淋巴信号激活因子转染的非洲绿猴肾细胞)对该麻疹病例的咽拭子标本进行麻疹病毒分离,经逆转录聚合酶链反应(Reverse transcript polymerase chain reaction,RT-PCR)方法扩增出麻疹病毒核蛋白(Nucleoprotein,N)羧基(COOH)端676个核苷酸片段。通过对扩增产物进行核苷酸序列测定和分析,以COOH端450个核苷酸片段构建基因亲缘性关系树,进行核苷酸和氨基酸同源性分析。该麻疹病毒分离株(MVi/Shanxi.CHN/20.09/1)和WHOD4基因型参考株Mont-real.CAN/89在基因亲缘性关系树上同属一个分支,核苷酸同源性为97.3%;与2009年流行于美国、加拿大、印度和俄罗斯的D4基因型麻疹野病毒的核苷酸和氨基酸同源性分别为98.0%~100%和97.3%~100%。结果表明,在本次输入性麻疹病例中分离到的麻疹病毒属于D4基因型,这对积累我国麻疹分子流行病学基线数据具有很重要的意义,同时也有助于监测和阐明麻疹病毒的传播途径。 展开更多
关键词 麻疹病毒 病毒学监测 D4基因型 亲缘性分析
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我国首例输入性D_9基因型麻疹病毒的分离和鉴定 被引量:51
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作者 张燕 何吉兰 +2 位作者 孙莉 王慧玲 许文波 《中国疫苗和免疫》 CAS 2009年第4期304-309,共6页
目的分离并鉴定我国首例输入性D9基因型麻疹病毒。方法使用Vero/SLAM细胞(非洲绿猴肾细胞/淋巴信号激活因子转染的非洲绿猴肾细胞)分离病毒,使用逆转录-聚合酶链反应扩增出编码核蛋白羧基末端450个核苷酸片段,通过对扩增产物进行核苷酸... 目的分离并鉴定我国首例输入性D9基因型麻疹病毒。方法使用Vero/SLAM细胞(非洲绿猴肾细胞/淋巴信号激活因子转染的非洲绿猴肾细胞)分离病毒,使用逆转录-聚合酶链反应扩增出编码核蛋白羧基末端450个核苷酸片段,通过对扩增产物进行核苷酸序列测定和分析,构建基因亲缘性关系树,进行遗传距离分析。结果四川省D9基因型麻疹病毒分离株MVi/Sichuan.CHN/07.09/1和世界卫生组织D9基因型代表株Victoria.AUS(维多利亚?澳大利亚)/12.99在基因亲缘性关系树上同属一个分支,核苷酸同源性为96.9%;和2008年流行于泰国和荷兰的D9基因型麻疹野病毒的核苷酸和氨基酸同源性分别为99.8%~100%和99.3%~100%;和中国大陆目前所使用的麻疹疫苗株沪191相比对,其核苷酸和氨基酸同源性分别为92.3%和90.7%;和中国目前流行的麻疹病毒绝对优势本土基因型H1基因型代表株相比对,其核苷酸和氨基酸同源性分别为90.8%和92.1%。结论输入中国四川省的麻疹病毒株为D9基因型。 展开更多
关键词 麻疹病毒 病毒学监测 D9基因型 亲缘性分析
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Hepatitis B virus taxonomy and hepatitis B virus genotypes 被引量:44
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作者 Stephan Schaefer 《World Journal of Gastroenterology》 SCIE CAS CSCD 2007年第1期14-21,共8页
Hepatitis B virus(HBV) is a member of the hepadnavirus family.Hepadnaviruses can be found in both mammals(orthohepadnaviruses) and birds(avihepadnaviruses).The genetic variability of HBV is very high.There are eight g... Hepatitis B virus(HBV) is a member of the hepadnavirus family.Hepadnaviruses can be found in both mammals(orthohepadnaviruses) and birds(avihepadnaviruses).The genetic variability of HBV is very high.There are eight genotypes of HBV and three clades of HBV isolates from apes that appear to be additional genotypes of HBV.Most genotypes are now divided into subgenotypes with distinct virological and epidemiological properties.In addition,recombination among HBV genotypes increases the variability of HBV.This review summarises current knowledge of the epidemiology of genetic variability in hepadnaviruses and,due to rapid progress in the field,updates several recent reviews on HBV genotypes and subgenotypes. 展开更多
关键词 Orthohepadnavirus Avihepadnavirus Hepatitis B virus genotype Subgenotype Recombination
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2012年在上海市发现中国大陆首例输入性D8基因型麻疹病例 被引量:45
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作者 孙晓冬 李崇山 +9 位作者 汤显 李智 张燕 唐伟 王静 王慧玲 杨彦基 李加 袁政安 许文波 《病毒学报》 CAS CSCD 北大核心 2013年第6期583-588,共6页
本文对中国首例输人性D8基因型麻疹病毒基因特征进行分析。用ELISA法检测血清麻疹病毒IgM抗体;用Vero/Slam细胞对采集的咽拭子标本进行病毒分离,分离到的麻疹毒株用RT-PCR方法扩增其核蛋白基因3’端的部分序列,并对扩增产物进行核... 本文对中国首例输人性D8基因型麻疹病毒基因特征进行分析。用ELISA法检测血清麻疹病毒IgM抗体;用Vero/Slam细胞对采集的咽拭子标本进行病毒分离,分离到的麻疹毒株用RT-PCR方法扩增其核蛋白基因3’端的部分序列,并对扩增产物进行核苷酸序列测定和分析,以3’端456个核苷酸为目的片段进行基因亲缘性关系分析。结果表明,上海市2012年共报告1105疑似麻疹病例,其中实验室确诊590例,临床符合病例2例,排除513例,报告发病率为2.52/10万;共采集到984份疑似麻疹病例咽拭子标本,分离到247株麻疹病毒,病毒分离阳性率为25.3%;除Shanghail2—239为D8基因型外,其他均为Hla基因亚型。Shanghail2—239与世界卫生组织(WorldHealthOrganization,WH0)参考株(Manchester.UNK30.94(D8)AF280803)核苷酸序列同源性为97.8%,氨基酸序列同源性为98.6%。与WHO其他基因型参考株核苷酸序列同源性为89.6%~94.5%,氨基酸序列同源性为88.7%~95.3%。 展开更多
关键词 麻疹病毒 D8基因型 基因特征分析
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中国2006~2008年流行性腮腺炎病毒的基因特征分析 被引量:45
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作者 崔爱利 朱贞 +9 位作者 王常银 王艳 周剑惠 吴宏伟 王爽 常新 檀晓娟 张燕 毛乃颖 许文波 《中国疫苗和免疫》 CAS 2009年第1期8-13,共6页
目的分析中国(未包括香港、澳门特别行政区和台湾地区,下同)2006~2008年流行性腮腺炎(腮腺炎)病毒(Mumps Virus,MuV)的基因特征。方法针对中国2007~2008年分离到的7株MuV小疏水蛋白(Small Hydro-phobic Protein,SH)基因316个核苷酸片... 目的分析中国(未包括香港、澳门特别行政区和台湾地区,下同)2006~2008年流行性腮腺炎(腮腺炎)病毒(Mumps Virus,MuV)的基因特征。方法针对中国2007~2008年分离到的7株MuV小疏水蛋白(Small Hydro-phobic Protein,SH)基因316个核苷酸片段进行逆转录-聚合酶链反应(Polymerase Chain Reaction,PCR)扩增,并对该PCR产物进行序列测定,结合从基因库下载的7株2006年中国MuV毒株序列以及世界卫生组织(WHO)MuV基因型参考株一起进行分子流行病学研究。结果通过比较核苷酸和氨基酸同源性和构建亲缘关系树发现,中国2006~2008年14株MuV分离株同属F基因型,但序列相互间存在差异。不同省份、不同年代的MuV毒株在亲缘关系树上呈分散交叉分布,无明显的时间和地理分布倾向。此外,通过分析2006~2008年MuV的组内和组间遗传距离发现,2006~2008年的MuV毒株序列无明显规律性变化。与序列同源性和亲缘关系树分析结果一致。结论中国2006~2008年流行的MuV同属F基因型,是由F基因型MuV的多个传播链引起的。并且1995年和2006~2008年的MuV毒株间序列差异较大,说明1995~2008年中国流行的MuV发生了一定程度的变异。另外,还发现F基因型MuV在SH基因上存在着特异性突变(CNt65、CNt105、GNt137、CNt192、CNt239),而其它基因型MuV在这些位点上均未发生改变。 展开更多
关键词 流行性腮腺炎病毒 基因特征 基因型
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2003-2007年中国风疹病毒基因特征分析 被引量:39
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作者 朱贞 许文波 +17 位作者 毛乃颖 蒋小泓 许松涛 何吉兰 孙莉 凌华 张珍英 李聪勇 巴卓玛 詹军 陈慧 王飞霞 周淑洁 陈霞 郑蕾 戴德芳 张红 梁勇 《病毒学报》 CAS CSCD 北大核心 2008年第1期7-16,共10页
本研究用Vero细胞或Vero/SLAM细胞从我国10个省(直辖市、自治区,下同)2003~2007年风疹暴发和散发病例的咽拭子标本中分离到57株风疹病毒,用RT-PCR方法扩增了57株风疹病毒E1基因1107个核苷酸的片段,并对该PCR产物进行序列测定和分析。... 本研究用Vero细胞或Vero/SLAM细胞从我国10个省(直辖市、自治区,下同)2003~2007年风疹暴发和散发病例的咽拭子标本中分离到57株风疹病毒,用RT-PCR方法扩增了57株风疹病毒E1基因1107个核苷酸的片段,并对该PCR产物进行序列测定和分析。结果提示,在基于WHO基因定型靶序列739个核苷酸片段构建的基因亲缘关系树上,其中55株风疹病毒株属于1E基因型,相对于其他国家的1E基因型,形成一个独立分支;另外2株风疹病毒属于2B基因型。57株风疹病毒大部分核苷酸的突变为无义突变,氨基酸序列高度保守,除了2株风疹病毒在E1蛋白血凝抑制和中和位点区域第212位氨基酸由Thr变为Ser,其他病毒株均无重要抗原位点的改变;所有我国已分离到的1E基因型风疹病毒在E1蛋白第338位氨基酸共享突变位点(Leu338→Phe338),而其他基因型以及其他国家的1E基因型风疹病毒在该位点均未发生突变,提示该氨基酸(Phe338)可能是我国1E基因型风疹病毒所特有。2003~2007年在我国10个省均分离到1E基因型,而2B基因型只在2006年从四川省的越南输入病例中分离到,提示1E为绝对优势基因型,2B基因型为输入基因型。与1979~1984年和1999~2002年我国流行的风疹基因型不同,发生了基因型的更替,近年我国风疹的流行是由1E基因型为主的风疹野病毒的多个传播链引起。 展开更多
关键词 风疹病毒 基因特征 基因型
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Hepatitis B virus genotypes and genome characteristics in China 被引量:35
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作者 Hong-Mei Li Jian-Qiong Wang +4 位作者 Rui Wang Qian Zhao Li Li Jin-Ping Zhang Tao Shen 《World Journal of Gastroenterology》 SCIE CAS 2015年第21期6684-6697,共14页
AIM:To analyze the hepatitis B virus(HBV) characters in China,as well as the correlation between several HBV mutation and hepatitis symptoms.METHODS:A total of 1148 HBV genome sequences from patients throughout China ... AIM:To analyze the hepatitis B virus(HBV) characters in China,as well as the correlation between several HBV mutation and hepatitis symptoms.METHODS:A total of 1148 HBV genome sequences from patients throughout China were collected via the National Center For Biotechnology Information database(information including:genotype,territory and clinical status).HBV genotypes were classified by a direct reference from the Genbank sequence annotation,phylogenetic tree and online software analysis(http://www.ncbi.nlm.nih.gov/projects/genotyping/formpage.cgi).The phylogenetic tree was constructed based on the neighbor-joining method by MEGA5.0 software.HBV sequences were grouped based on phylogenetic tree and the distance between the groups was calculated by using the computer between group mean distance methods.Seven hundred and twelve HBV sequences with clear annotation of clinical symptoms were selected to analyses the correlation of mutation and clinical symptoms.Characteristics of sequences were analyzed by using DNAStar and BioEdit software packages.The codon usage bias and RNA secondary structures analysis were performed by RNAdraw software.Recombination analysis was performed by using Simplot software.RESULTS:In China,HBV genotype C was the predominant in Northeastern,genotype B was predominant in Central Southern areas,genotype B and C were both dominant in Southwestern areas,and the recombinant genotype C/D was predominant in Northwestern areas.C2 and B2 were identified as the two major sub-genotypes,FJ386674 might be a putative sub-genotype as B10.The basal core promoter double mutation and pre-C mutation showed various significant differences between hepatitis symptoms.In addition to ATG,many other HBV initiation codons also exist.HBV has codon usage bias;the termination codon of X,C and P open reading frames(ORF) were TAA,TAG,and TGA,respectively.The major stop codons of S-ORF were TAA(96.45%) and TGA(83.60%) in B2 and C2 subtype,respectively.CONCLUSION:This study recapitulated the epidemiology of HBV in China, 展开更多
关键词 HEPATITIS B virus genotype Phylogenetictree Clinical SYMPTOMS Mutation CODON USAGE BIAS
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Characteristics of general distribution of hepatitis B virus genotypes in China 被引量:32
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作者 Zhu, Chang-Tai Dong, Chun-Lei 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2009年第4期397-401,共5页
BACKGROUND: Based on differences in the virus nucleotide sequence, hepatitis B virus (HBV) genotypes are presently divided into genotypes A-H. The geographic distributions of HBV genotypes differ in countries and regi... BACKGROUND: Based on differences in the virus nucleotide sequence, hepatitis B virus (HBV) genotypes are presently divided into genotypes A-H. The geographic distributions of HBV genotypes differ in countries and regions. To determine the general characteristics of their distributions in the mainland of China, we reviewed articles on HBV genotypes published in China. METHODS: The Wanfang Database and the CNKI Database were searched for original articles involving HBV in China, and then the data from the articles were classified according to genotype and latitude and analyzed using SPSS 11.0. RESULTS: The main HBV genotypes were C, B and BC, and their rates were 50.99%, 35.58%, 6.07%, respectively; other genotypes were rare. There was a negative correlation between latitude and the rate of genotype B (r=-0.782, P<0.01), while a positive correlation existed between latitude and the rate of genotype C (r=0.646, P<0.01). No correlation was observed between latitude and the rates of other genotypes (r=0.294, P>0.05). CONCLUSIONS: In China, HBV genotype C predominates, followed by genotype C and mixed genotype BC; genotypes A, D and others are rare. With an increasing latitude, the distribution of genotype B decreases gradually, while that of genotype C tends to increase. The other genotypes do not show any changes. 展开更多
关键词 hepatitis B virus genotype chronic hepatitis B
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中国大陆流行的风疹病毒的变异变迁规律研究 被引量:33
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作者 朱贞 蔡茹 +8 位作者 崔爱利 张燕 毛乃颖 许松涛 姬奕昕 王慧玲 张盛 许文波 吴宏伟 《病毒学报》 CAS CSCD 北大核心 2017年第1期67-76,共10页
从分子水平上探讨1999~2015年中国大陆流行的风疹病毒动态变异变迁规律。方法依据全国麻疹/风疹实验室网络的风疹病毒学监测数据,对1999~2015年中国流行风疹病毒进行分子进化分析。1999~2015年从全国29个省市(除新疆和西藏外)共获得风... 从分子水平上探讨1999~2015年中国大陆流行的风疹病毒动态变异变迁规律。方法依据全国麻疹/风疹实验室网络的风疹病毒学监测数据,对1999~2015年中国流行风疹病毒进行分子进化分析。1999~2015年从全国29个省市(除新疆和西藏外)共获得风疹病毒株1737株,分属于4个基因型(1E,1F,2A和2B基因型):11E基因型风疹病毒自2001年首次分离到之后,替代1F基因型风疹病毒成为2001~2013年中国流行风疹病毒的优势基因型,并从年代上可分为两个进化分支[Cluster A(2004-2015)和Cluster B(2001-2009)],然而自2011年其检出比例逐渐下降,至2015年该比例仅为1.3%;21F基因型风疹病毒在地理上局限于中国,而在2002年之后未再监测到,推测其在中国的传播可能已被阻断;32A基因型风疹病毒株均来自于疫苗相关病例;42000~2015年间中国至少有4个不同的2B基因型风疹病毒传播链(Lineage1-4),2B基因型风疹病毒在2010年之前只有零星的流行,一直处于弱势,但自2011年输入型2B基因型风疹病毒(Lineage 3)的检出构成比逐年增高,并在2014~2015年成为中国流行风疹病毒的主要基因型。通过对中国连续16年风疹病毒变异变迁规律的研究,系统地掌握了其进化和流行规律,同时也为中国风疹控制和将来消除提供了重要的病毒学监测数据。 展开更多
关键词 风疹病毒 基因型 变异变迁规律
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麻疹病毒流行株的基因变化与现行疫苗的预防效果 被引量:31
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作者 陈志慧 《中国计划免疫》 2003年第1期47-52,共6页
麻疹病毒仅 1个血清型 ,但通过对流行株的血凝 (H)蛋白和核 (N)蛋白基因的序列分析 ,至 2 0 0 1年 10月世界卫生组织根据有关资料确认麻疹病毒有 8个基因组 (A、B、C、D、E、F、G、H) ,共 2 0个基因型。其间H蛋白基因和N蛋白基因的核苷... 麻疹病毒仅 1个血清型 ,但通过对流行株的血凝 (H)蛋白和核 (N)蛋白基因的序列分析 ,至 2 0 0 1年 10月世界卫生组织根据有关资料确认麻疹病毒有 8个基因组 (A、B、C、D、E、F、G、H) ,共 2 0个基因型。其间H蛋白基因和N蛋白基因的核苷酸差异达 7% ,而N基因COOH端的 4 5 0个核苷酸的差异在不同型之间 >12 %。中国流行的麻疹病毒主要为H基因组的H1型 ,是一种新的基因型。目前国内外使用的麻疹疫苗皆为A基因型 ,通过交叉中和试验证实 ,现行的麻疹疫苗免疫后的抗体能中和不同基因型的麻疹病毒流行株 ,但中和抗体滴度略低 ,仍可预防麻疹发生。 展开更多
关键词 麻疹病毒 流行株 基因变化 现行疫苗 预防效果
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Genetic variation of hepatitis B virus and its significance forpathogenesis 被引量:27
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作者 Zhen-Hua Zhang Chun-Chen Wu +3 位作者 Xin-Wen Chen Xu Li Jun Li Meng-Ji Lu 《World Journal of Gastroenterology》 SCIE CAS 2016年第1期126-144,共19页
Hepatitis B virus(HBV)has a worldwide distribution and is endemic in many populations.Due to its unique life cycle which requires an error-prone reverse transcriptase for replication,it constantly evolves,resulting in... Hepatitis B virus(HBV)has a worldwide distribution and is endemic in many populations.Due to its unique life cycle which requires an error-prone reverse transcriptase for replication,it constantly evolves,resulting in tremendous genetic variation in the form of genotypes,sub-genotypes,and mutations.In recent years,there has been considerable research on the relationship between HBV genetic variation and HBV-related pathogenesis,which has profound implications in the natural history of HBV infection,viral detection,immune prevention,drug treatment and prognosis.In this review,we attempted to provide a brief account of the influence of HBV genotype on the pathogenesis of HBV infection and summarize our current knowledge on the effects of HBV mutations in different regions on HBV-associated pathogenesis,with an emphasis on mutations in the pre S/S proteins in immune evasion,occult HBV infection and hepatocellular carcinoma(HCC),mutations in polymerase in relation to drug resistance,mutations in HBV core and e antigen in immune evasion,chronicalization of infection and hepatitis B-related acute-on-chronic liver failure,and finally mutations in HBV x proteins in HCC. 展开更多
关键词 HEPATITIS B virus genotype Variation PATHOGENESIS
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Characterization of hepatitis B virus genotypes/subgenotypes in 1301 patients with chronic hepatitis B in North China 被引量:25
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作者 LI Xiao-dong WANG Lin +7 位作者 LIU Yan XU Zhi-hui DAI Jiu-zeng LI Le YAO Zeng-tao XIN Shao-jie XU Dong-ping ZHAO Jing-ming 《Chinese Medical Journal》 SCIE CAS CSCD 2011年第24期4178-4183,共6页
Background There is still a paucity of data on hepatitis B virus (HBV) subgenotype prevalence in North China based on sequencing of large-size samples. In addition, whether HBV genotypes impact drug-resistance-assoc... Background There is still a paucity of data on hepatitis B virus (HBV) subgenotype prevalence in North China based on sequencing of large-size samples. In addition, whether HBV genotypes impact drug-resistance-associated and HBV e antigen (HBeAg)-Ioss-associated mutations in patients with chronic hepatitis B (CHB) is still under investigation. This study aimed to disclose clinical prevalence of HBV genotypes/subgenotypes in North China and the clinical implications of HBV genotype classification in respect to HBeAg loss and drug-resistant occurrence. Methods Sera were collected from 1301 nucleos(t)ide analog-experienced CHB patients. Viral DNA was extracted and used as template for HBV genome amplification by nested PCR. DNA sequencing was performed for the analysis of HBV genotypes/subgenotypes, drug-resistance-associated mutations in polymerase gene and HBeAg-loss-associated mutations in precore/basal core promoter (BCP) regions. Results HBV/B, HBV/C, and HBV/D were detected in 190 (14.6%), 1096 (84.2%), and 15 (1.2%) patients, respectively. HBV/B2 (182/190), HBV/C2 (1069/1096), and HBV/D1 (12/15) were predominant subgenotypes within individual genotypes. By contrast, C2 prevalence is relatively lower in Beijing area (77.2%) than in other north areas (84.9%-87.4%). HBV/C-infected patients had an older age and a lower serum albumin level but similar HBV DNA and alanine aminotransferase (ALT) levels compared to HBV/B-infected patients. HBV/C infection had a higher incidence of lamivudine-resistant mutations rtM2041N (44.9% vs. 30.2%, P 〈0.01) and BCP mutations A1762T+G1764A (65.8% vs. 40.0%, P〈0.01) compared with HBV/B infection. Conclusions C2 is the most prevalent HBV subgenotype followed by B2 in CHB patients in North China; and HBV genotype prevalence is influenced by immigrant population. HBV/C infection is likely to have longer disease duration and severer liver functional impairment and might be more susceptible to develop lamivudine res 展开更多
关键词 hepatitis B virus genotype drug resistance PRECORE basal core promoter mutation
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Hepatitis B virus genotypes:an overview 被引量:25
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作者 Mamun-Al Mahtab Salimur Rahman +1 位作者 Mobin Khan Fazal Karim 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2008年第5期457-464,共8页
BACKGROUND:Hepatitis B virus(HBV)infection is a major cause of mortality and morbidity globally.The quest continues to identify viral factors that influence disease progression and severity as well as responses to tre... BACKGROUND:Hepatitis B virus(HBV)infection is a major cause of mortality and morbidity globally.The quest continues to identify viral factors that influence disease progression and severity as well as responses to treatment of HBV infection.Based on variations in HBV,the virus has been divided into a number of genotypes. DATA SOURCES:Review of published literature on HBV genotypes. RESULTS:HBV genotypes are likely to be important in determining the severity and progression of HBV-induced liver disease as well as responses to different anti-viral agents. CONCLUSION:Although HBV genotyping is not yet recommended for routine use in treating HBV infection, available data suggest that,as in hepatitis C virus infection, HBV genotyping is also likely to become a routine investigation for HBV treatment,perhaps in the not too distant future. 展开更多
关键词 hepatitis B virus genotype
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2001-2017年中国流行性腮腺炎病毒学监测及基因特征分析 被引量:25
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作者 崔爱利 朱贞 +6 位作者 张燕 邱琪 毛乃颖 许松涛 姬奕昕 王慧玲 许文波 《中国疫苗和免疫》 北大核心 2018年第3期249-255,共7页
目的阐明中国大陆地区流行性腮腺炎(流腮)病毒学监测进展及腮腺炎病毒(MuV)基因特征。方法依托全国麻疹/风疹实验室网络,自2001年起在全国范围内开展流腮病毒学监测。通过病毒分离、Real-time RT-PCR和RT-PCR等方法对MuV进行实验室... 目的阐明中国大陆地区流行性腮腺炎(流腮)病毒学监测进展及腮腺炎病毒(MuV)基因特征。方法依托全国麻疹/风疹实验室网络,自2001年起在全国范围内开展流腮病毒学监测。通过病毒分离、Real-time RT-PCR和RT-PCR等方法对MuV进行实验室检测和病毒基因型别鉴定;依据SH靶基因316个核苷酸序列,分析中国大陆地区MuV基因型别及其分布特征。结果 2001-2017年从中国22个省份共获得MuV SH基因序列451条,通过MuV基因型鉴定,439条(97.33%)为F基因型,12条(2.67%)为G基因型;2001-2017年有多个MuV F基因型分支共循环;G基因型于2011-2016年在局部地区流行。结论中国大陆地区MuV优势流行株为F基因型,G基因型呈局部流行;需加强流腮的持续性病毒学监测。 展开更多
关键词 腮腺炎病毒 病毒学监测 基因型
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重庆地区乙肝病毒基因型分布及其临床意义 被引量:21
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作者 谭文婷 邓国宏 +2 位作者 王宇明 但芸婕 况雪梅 《第三军医大学学报》 CAS CSCD 北大核心 2008年第24期2321-2323,共3页
目的调研重庆地区乙型肝炎病毒(hepatitis B virus, HBV)基因型构成,探讨HBV基因型与乙型肝炎疾病进程的相关性。方法用SSP-PCR法对360例HBV DNA阳性患者HBV基因分型,采用多因素Logistic回归分析HBV基因型与疾病表型的相关性。结果本回... 目的调研重庆地区乙型肝炎病毒(hepatitis B virus, HBV)基因型构成,探讨HBV基因型与乙型肝炎疾病进程的相关性。方法用SSP-PCR法对360例HBV DNA阳性患者HBV基因分型,采用多因素Logistic回归分析HBV基因型与疾病表型的相关性。结果本回顾性研究人群中,HBV-B型占45.6%,HBV-C型占53.9%,分型失败0.5%。随着疾病从慢性乙型肝炎到肝硬化、原发性肝细胞癌的进展,C型HBV所占比例显著上升(χ2=23.368,P<0.001)。Logistic回归分析显示HBV基因型是HBV感染者罹患肝癌的独立风险因素(OR=3.2,P=0.01)。B、C基因型患者的HBV DNA水平和HBeAg阳性率无显著差异(P>0.05)。结论重庆地区HBV基因型以B、C型为主,C型HBV更易导致严重的肝病,HBV基因型是影响疾病进程的重要因素。 展开更多
关键词 肝炎病毒 乙型 基因型 疾病表型 HBV DNA
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Relationship between HBV genotypes and anti-viral therapeutic efficacy of interferon-alpha 被引量:21
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作者 Ma, Jin-Chun Wang, Lu-Wen +3 位作者 Li, Xin-Jian Liao, Yong-Feng Hu, Xi-Ya Gong, Zuo-Jiong 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2007年第2期166-171,共6页
BACKGROUND: Much evidence demonstrates that the genotypes of hepatitis B virus (HBV) present differences in pathogenicity and outcomes owing to differences in genetic structure. This study aimed to investigate the inf... BACKGROUND: Much evidence demonstrates that the genotypes of hepatitis B virus (HBV) present differences in pathogenicity and outcomes owing to differences in genetic structure. This study aimed to investigate the influences of HBV genotypes on the anti-viral therapeutic efficacy of interferon-alpha (IFN-alpha) in chronic hepatitis B patients, and to determine the relationship between HBV genotypes and levels of viral replication or gene variations. METHODS: The chronic hepatitis B patients who were treated with IFN-alpha were selected randomly. Anti-viral therapeutic efficacy was monitored in these patients. The HBV genotypes were detected by PCR microplate hybridization ELISA. The levels of serum HBV-DNA were determined by fluorescence quantitative PCR. HBV gene variation at pre-C and basic core promoter (BCP) regions were assayed by gene chip technology. RESULTS: Genotypes B and C were predominant in 94 chronic hepatitis B patients. A, E and F genotypes were not found in these patients. The HBV-DNA levels of genotype C and mixed genotypes were significantly higher than those of genotype B. The response to IFN-alpha in patients with genotype B was markedly better than in those with genotypes C and D, and the complete response to IFN-alpha was only observed in genotype B. The response to IFN-alpha in patients with mixed genotypes was the least sensitive. The negative transition of HBeAg was correlated with variations in the HBV pre-C and BCP regions in patients with partial or no response to IFN-alpha. The variation rates of HBV pre-C and BCP regions were clearly higher in genotype C than in genotype B. CONCLUSIONS: The results suggest that HBV genotype is correlated with the serum levels of HBV-DNA, HBV gene variations and therapeutic efficacy of IFN-alpha. The regular detection of HBV genotypes in the clinic will be of benefit for disease prognosis and planning of anti-viral therapeutic strategies. 展开更多
关键词 hepatitis B virus genotype gene variation INTERFERON-ALPHA anti-viral therapy
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浙江省2005年麻疹病毒流行株基因特性分析 被引量:21
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作者 冯燕 严菊英 +4 位作者 卢亦愚 史雯 茅海燕 周敏 余蓓蓓 《中华流行病学杂志》 CAS CSCD 北大核心 2006年第5期406-408,共3页
目的分析浙江省2005年麻疹病毒流行株的基因特性。方法对暴发疫情中分离的 4株麻疹病毒采用逆转录-聚合酶链反应(RT-PCR)扩增血凝素蛋白(H)和核蛋白(N)基因,纯化产物进行核苷酸序列测定。结果浙江省2005年分离到的4株麻疹病毒流行株均... 目的分析浙江省2005年麻疹病毒流行株的基因特性。方法对暴发疫情中分离的 4株麻疹病毒采用逆转录-聚合酶链反应(RT-PCR)扩增血凝素蛋白(H)和核蛋白(N)基因,纯化产物进行核苷酸序列测定。结果浙江省2005年分离到的4株麻疹病毒流行株均为麻疹H1基因型,属于中国麻疹病毒优势基因型。各分离株之间H基因氨基酸同源性为99.2%-99.7%,N基因氨基酸同源性为99.8%;与中国疫苗株沪191株的H基因和N基因比较,其氨基酸水平上的同源性分别为 95.2%-95.5%和95.5%。结论浙江省2005年分离到的麻疹病毒流行株属于同一性状毒株,均为 H1基因型;与中国疫苗株沪191株相比较,两者在基因特性上存在明显差异。 展开更多
关键词 麻疹病毒 基因型别 核苷酸序列
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云南省乙型脑炎病毒基因分型研究 被引量:22
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作者 王静林 张海林 +1 位作者 周济华 梁国栋 《中华实验和临床病毒学杂志》 CAS CSCD 北大核心 2008年第2期87-90,共4页
目的对近30年来云南省分离的19株乙脑病毒进行PrM基因核苷酸序列测定,以确定病毒基因分型。方法乙脑病毒接种3日龄乳鼠,取发病濒死的乳鼠脑组织经研磨制成上清液。提取核酸,通过RT-PCR扩增PrM-C基因片段,用病毒PrM-C(456.695)区... 目的对近30年来云南省分离的19株乙脑病毒进行PrM基因核苷酸序列测定,以确定病毒基因分型。方法乙脑病毒接种3日龄乳鼠,取发病濒死的乳鼠脑组织经研磨制成上清液。提取核酸,通过RT-PCR扩增PrM-C基因片段,用病毒PrM-C(456.695)区核苷酸序列与国内外不同年代分离的72株各基因型乙脑病毒相应序列作比较,用Woan-Ru Chen建立的方法进行基因型分析。结果云南省分离的乙脑病毒均可引起3日龄乳鼠在78h之内死亡;核酸序列分析结果显示,19株乙脑病毒中,17株属基因Ⅲ型,2株属基因I型,其中M28分离自1977年;两株I型病毒与17株Ⅲ型病毒间核苷酸序列的差异大于15%。分离自不同地区、不同时间、不同宿主的Ⅲ型乙脑病毒核苷酸间仅存在3.8%-5.2%的差异。结论云南省广泛存在基因Ⅲ型和I型乙型脑炎病毒流行,Ⅲ型为主要流行型。 展开更多
关键词 脑炎病毒 日本 基因型 流行病学 分子
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