Tea is among the world’s most widely consumed non-alcoholic beverages and possesses enormous economic,health,and cultural values.It is produced from the cured leaves of tea plants,which are important evergreen crops ...Tea is among the world’s most widely consumed non-alcoholic beverages and possesses enormous economic,health,and cultural values.It is produced from the cured leaves of tea plants,which are important evergreen crops globally cultivated in over 50 countries.Along with recent innovations and advances in biotechnologies,great progress in tea plant genomics and genetics has been achieved,which has facilitated our understanding of the molecular mechanisms of tea quality and the evolution of the tea plant genome.In this review,we briefly summarize the achievements of the past two decades,which primarily include diverse genome and transcriptome sequencing projects,gene discovery and regulation studies,investigation of the epigenetics and noncoding RNAs,origin and domestication,phylogenetics and germplasm utilization of tea plant as well as newly developed tools/platforms.We also present perspectives and possible challenges for future functional genomic studies that will contribute to the acceleration of breeding programs in tea plants.展开更多
AIM： To explore the role of Helicobacter pylori （Hpylori） infection on the risk of digestive tract cancers. METHODS： In total, 199 oral squamous-cell carcinoma （SCC）, 317 esophagea! SCC, 196 gastric cardia and n...AIM： To explore the role of Helicobacter pylori （Hpylori） infection on the risk of digestive tract cancers. METHODS： In total, 199 oral squamous-cell carcinoma （SCC）, 317 esophagea! SCC, 196 gastric cardia and non-cardia adenocarcinoma and 240 colon adenocarcinoma patients were recruited for serum tests of Hpylori infection. Two hospital- and one community-based control groups were used for the comparisons. Hpylori seropositivity was determined by an enzyme linked immunosorbent assay method against Hpylori IgG. RESULTS： Presence of H pylori infection was significantly inversely associated with esophageal SCC [adjusted odds ratio （AOR）： 0.315-0.472, all P-value 〈 0.05] but positively associated with gastric adenocarcinoma （both cardia and non-cardia） （AOR： 1.636-3.060, all P-value 〈 0.05） in comparison to the three control groups. Similar results were not found in cancers of the oral cavity and colon. CONCLUSION： Our findings support the finding that H pylori seropositivity is inversely associated with esophageal SCC risk, but increases the risk of gastric cardia adenocarcinoma.展开更多
The tea plant[Camellia sinensis(L.)O.Kuntze]is an industrial crop in China.The Anhui Province has a long history of tea cultivation and has a large resource of tea germplasm with abundant genetic diversity.To reduce t...The tea plant[Camellia sinensis(L.)O.Kuntze]is an industrial crop in China.The Anhui Province has a long history of tea cultivation and has a large resource of tea germplasm with abundant genetic diversity.To reduce the cost of conservation and utilization of germplasm resources,a core collection needs to be constructed.To this end,573 representative tea accessions were collected from six major tea-producing areas in Anhui Province.Based on 60 pairs of simple sequence repeat(SSR)markers,phylogenetic relationships,population structure and principal coordinate analysis(PCoA)were conducted.Phylogenetic analysis indicated that the 573 tea individuals clustered into five groups were related to geographical location and were consistent with the results of the PCoA.Finally,we constructed a core collection consisting of 115 tea individuals,accounting for 20%of the whole collection.The 115 core collections were considered to have a 90.9%retention rate for the observed number of alleles(Na),and Shannon’s information index(I)of the core and whole collections were highly consistent.Of these,39 individuals were preserved in the Huangshan area,accounting for 33.9%of the core collection,while only 10 individuals were reserved in the Jinzhai County,accounting for 8.9%of the core set.PCoA of the accessions in the tea plant core collection exhibited a pattern nearly identical to that of the accessions in the entire collection,further supporting the broad representation of the core germplasm in Anhui Province.The results demonstrated that the core collection could represent the genetic diversity of the original collection.Our present work is valuable for the high-efficiency conservation and utilization of tea plant germplasms in Anhui Province.展开更多
基金support from the National Natural Science Foundation of China(31800180)the Natural Science Foundation of Anhui Province(1908085MC75)+5 种基金the National Key Research and Development Program of China(2018YFD1000601)the Science and Technology Project of Anhui Province(13Z03012)the Special Innovative Province Construction in Anhui Province(15czs08032)the Changjiang Scholars and Innovative Research Team in University(IRT1101)the China Postdoctoral Science Foundation(No.2017M621992)the Postdoctoral Science Foundation of Anhui Province,China(No.2017B189).
文摘Tea is among the world’s most widely consumed non-alcoholic beverages and possesses enormous economic,health,and cultural values.It is produced from the cured leaves of tea plants,which are important evergreen crops globally cultivated in over 50 countries.Along with recent innovations and advances in biotechnologies,great progress in tea plant genomics and genetics has been achieved,which has facilitated our understanding of the molecular mechanisms of tea quality and the evolution of the tea plant genome.In this review,we briefly summarize the achievements of the past two decades,which primarily include diverse genome and transcriptome sequencing projects,gene discovery and regulation studies,investigation of the epigenetics and noncoding RNAs,origin and domestication,phylogenetics and germplasm utilization of tea plant as well as newly developed tools/platforms.We also present perspectives and possible challenges for future functional genomic studies that will contribute to the acceleration of breeding programs in tea plants.
基金Supported by Grants From Kaohsiung Medical University Hospital,97-ND-006,the National Science Council,NSC97-2314-B-037-018,NSC 98-2314-B-037-004,and the Department of Health,Taiwan
文摘AIM： To explore the role of Helicobacter pylori （Hpylori） infection on the risk of digestive tract cancers. METHODS： In total, 199 oral squamous-cell carcinoma （SCC）, 317 esophagea! SCC, 196 gastric cardia and non-cardia adenocarcinoma and 240 colon adenocarcinoma patients were recruited for serum tests of Hpylori infection. Two hospital- and one community-based control groups were used for the comparisons. Hpylori seropositivity was determined by an enzyme linked immunosorbent assay method against Hpylori IgG. RESULTS： Presence of H pylori infection was significantly inversely associated with esophageal SCC [adjusted odds ratio （AOR）： 0.315-0.472, all P-value 〈 0.05] but positively associated with gastric adenocarcinoma （both cardia and non-cardia） （AOR： 1.636-3.060, all P-value 〈 0.05） in comparison to the three control groups. Similar results were not found in cancers of the oral cavity and colon. CONCLUSION： Our findings support the finding that H pylori seropositivity is inversely associated with esophageal SCC risk, but increases the risk of gastric cardia adenocarcinoma.
基金supported by the Project of Major Science and Technology of Anhui Province,China(202003a06020021)the National Key Research and Development Program of China(2021YFD1200200,2021YFD1200203)+2 种基金the National Natural Science Foundation of China(U20A2045)the Base of Introducing Talents for Tea Plant Biology and Quality Chemistry(D20026)the Anhui Provincial Natural Science Foundation,China(2108085QC121).
文摘The tea plant[Camellia sinensis(L.)O.Kuntze]is an industrial crop in China.The Anhui Province has a long history of tea cultivation and has a large resource of tea germplasm with abundant genetic diversity.To reduce the cost of conservation and utilization of germplasm resources,a core collection needs to be constructed.To this end,573 representative tea accessions were collected from six major tea-producing areas in Anhui Province.Based on 60 pairs of simple sequence repeat(SSR)markers,phylogenetic relationships,population structure and principal coordinate analysis(PCoA)were conducted.Phylogenetic analysis indicated that the 573 tea individuals clustered into five groups were related to geographical location and were consistent with the results of the PCoA.Finally,we constructed a core collection consisting of 115 tea individuals,accounting for 20%of the whole collection.The 115 core collections were considered to have a 90.9%retention rate for the observed number of alleles(Na),and Shannon’s information index(I)of the core and whole collections were highly consistent.Of these,39 individuals were preserved in the Huangshan area,accounting for 33.9%of the core collection,while only 10 individuals were reserved in the Jinzhai County,accounting for 8.9%of the core set.PCoA of the accessions in the tea plant core collection exhibited a pattern nearly identical to that of the accessions in the entire collection,further supporting the broad representation of the core germplasm in Anhui Province.The results demonstrated that the core collection could represent the genetic diversity of the original collection.Our present work is valuable for the high-efficiency conservation and utilization of tea plant germplasms in Anhui Province.
