摘要
为了获得p53突变体的稳定剂,依次利用利宾斯基五原则,通过2次分子对接和全原子分子动力学(MD)模拟从Drug Bank 4.0数据库中筛选获得了潜在的稳定剂他克林.利用MD模拟进一步验证他克林和目标蛋白质之间的亲和作用.结果表明,他克林能够紧密结合到Y220C突变所形成的疏水空腔之中;他克林和目标蛋白质之间的主要作用力为疏水和静电相互作用,其中疏水相互作用占主导地位.此外,他克林分别与目标蛋白质的残基Leu145,Val147和Asp228形成3个氢键.基于MD模拟轨迹分析了他克林与p53CY220C的结合过程.由硫黄素T荧光光谱进一步证明他克林能够提高p53C-Y220C突变体的稳定性.
About half of cancers are caused by the mutation in the tumor suppressor p53. A hydrophobic cavity on the surface of p53 was caused by the Y220 C mutation. The surface crevice is on the opposite side and distant from the DNA-binding domain,making it a particularly attractive target site for stabilizing small-molecule drugs. In order to obtain the effective stabilizers,Lipinski＇s rule of five,twice docking methods and molecular dynamics（ MD） simulations were successively used for virtual screening the Drug Bank 4. 0 library and tacrine was obtained as a candidate stabilizer. Then,all-atom MD simulations were used to verify the affinity between tacrine and the target protein. The MD simulation indicated that tacrine bound tightly to the pocket and the complex remained stable. The affinity between tacrine and the target protein was further analyzed. It was found that the hydrophobic and electrostatic interactions dominated the affinity between tacrine and the target protein. And,the hydrophobic interactions were dominant force. Moreover,there were 3 hydrogen bonds between tacrine and the residues Leu145,Val147 and Asp228 of p53C-Y220 C. And then,the detailed binding process of tacrine and p53C-Y220 C was probed based on MD simulations. Finally,the stabilizing capacity of tacrine on p53C-Y220 C was further validated by thioflavine T fluorescent experiments.
出处
《高等学校化学学报》
SCIE
EI
CAS
CSCD
北大核心
2016年第4期706-714,共9页
Chemical Journal of Chinese Universities
基金
国家自然科学基金(批准号:21576199)
中国博士后科学基金(批准号:2013M530115
2012T50241)资助
