摘要
目前,大量园艺植物基因组测序已经完成或接近尾声,它们的基因组序列和注释数据极大地促进了功能基因组学研究。为给科研人员提供批量下载特定的基因组区段序列和注释平台,笔者开发了一个称为OBRRP的生物信息学工具。OBRRP具有提取葡萄(Vitis vinifera)、桃(Prunuspersica)、草莓(Fragariia vesca)、黄瓜(Cucumissativus)、西瓜(Citrullus lanatus)、番茄(Solanum lycopersicum)、甜橙(Citrus sinensis)、苹果(Malus x domestica)、猕猴桃(Actinidia chinensis)、马铃薯(Solanum tuberosum)、香蕉(Musa acuminata)和拟南芥(Arabidopsis thaliana)12种植物基因组序列及注释数据的功能;同时,也具有扩展到其它Gbrowser浏览器架构的数据库功能。测试结果表明,OBRRP是一个快捷简便的在线、批量和实时提取工具,其登录地址为http://bioinfo.jit.edu.cn/OBRRP/。
The genomes of a large number of horticultural plants have been or are being sequenced. The genomic se- quences and annotated data have greatly promoted functional genomics research. To provide a batch-retrieval platform of sub-data for researchers, we developed a bioinformatics tool called Online, Batch, and Real-time Retrieve Platform （OBRRP）. The program can be used to retrieve special genomic subsequences or sub-annotations from databases for grape, peach, strawberry, cucumber, watermelon, tomato, orange, apple, kiwifruit, potato, banana, and Arabidopsis. Also, it can be extended to other species by using Gbrowser with its genomic database. OBRRP is a convenient, online, real-time, batch retrieval tool and is available at http：/Ibioinfo.jit.edu.cnlOBRRP/.
出处
《植物学报》
CAS
CSCD
北大核心
2015年第3期388-393,共6页
Chinese Bulletin of Botany
基金
国家自然科学基金(No.31171273)
江苏省"江苏省333高层次人才培养工程"(No.BRA2014003)
关键词
基因组
序列提取
注释提取
生物信息技术
genomics, sequence retrieval, annotation retrieval, bioinformatics
