Ai2NU: A Cytoscape plugin for uniformization of biomolecular accession identifiers

Ai2NU:A Cytoscape plugin for uniformization of biomolecular accession identifiers

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摘要 Cytoscape is one of the most popular platforms for biomolecular networks research. However Cytoscape cannot display biomolecular names according to their accession identifiers in different databases. A plugin named Ai2NU is designed and implemented in this paper. It can make biomolecular names displayed automatically in biomolecular networks graphs in Cytoscape by constructing a local dictionary. It is convenient for researchers to recognize biomolecules and enhance the research efficiency. Cytoscape is one of the most popular platforms for biomolecular networks research. However Cytoscape cannot display biomolecular names according to their accession identifiers in different databases. A plugin named Ai2NU is designed and implemented in this paper. It can make biomolecular names displayed automatically in biomolecular networks graphs in Cytoscape by constructing a local dictionary. It is convenient for researchers to recognize biomolecules and enhance the research efficiency.

作者谢江谭军易荣贵程笑王兴旺张武

机构地区 School of Computer Engineering and Science

出处《Journal of Shanghai University(English Edition)》 CAS 2011年第5期456-462,共7页 上海大学学报（英文版）

基金 Project supported by the Shanghai Leading Academic Discipline Project(Grnat No.J50103) the Ph D Programs Foundation of Ministry of Education of China(Grant No.20080280007) the Innovation Program of Municipal Education Commission of Shanghai Municipality(Grant No.11Y203) the Innovation Foundation of Shanghai University

关键词 Cytoscape biomolecular networks biomolecular accession identifier VISUALIZATION Cytoscape, biomolecular networks, biomolecular accession identifier, visualization

分类号 Q811.4 [生物学—生物工程] TP311.13 [自动化与计算机技术—计算机软件与理论]

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Ai2NU: A Cytoscape plugin for uniformization of biomolecular accession identifiers

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