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中国人类免疫缺陷病毒(HIV-1)D亚型毒株gag、env和tat基因的序列分析 被引量:17

Identification and characterization of HIV1 subtype D strain in China
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摘要 目的通过对HIV1毒株gag、tat、env基因的序列分析,阐明D亚型HIV1毒株已在中国出现。方法从1名四川非洲回国劳务人员HIV感染者(SC9712)淋巴细胞(PBMC)中提取前病毒DNA,使用套式PCR方法分别扩增HIV1的gag基因区、env基因的C2V3区和tat基因的第一外显子。结果发现SC9712在gag区、env区和tat区与国际标准D亚型毒株的基因距离最近,其中在gag区与V1203和K31的基因离散率分别为994%和959%,在tat基因区与UG274A的基因离散率只有756%,在env区与MAL的基因离散率是1386%。系统树分析表明,SC9712与国际标准D亚型毒株、VI203、K31、MAL及UG274和Z276等非洲流行株聚在一起。结论非洲D亚型毒株已随着援外劳务人员的回国传入中国。 Objective Through sequence analysis of HIV1 gag, tat and env regions , the subtype D HIV1 had been identified appering in China. Methods The blood was collected from HIV1 infected individual (SC9 712) in Sichuan Province. The peripheral blod mononuclear cells (PBMCs) were isolated from the blood by ficoll and the genomic DNA was extracted. The gag gene, the C2V3 of the env gene and the first exon of tat gene were amplified by nestedPCR and sequenced directly. Results The genetic distance respectively is 7.56% in tat gene between SC9 712 and UG274A, 9.59% and 9.94% in gag gene between SC9 712 and K31 and VI203, 13.86% in env gene between SC9 712 and MAL. On the phylogenetic tree the SC9 712 HIV1 strain clustered with the Africa subtype D strains UG274A, K31, VI203 and MAL. The above data demonstrated that SC9 712 was subtype D HIV1 strain. Epidemiological data showed that SC9 712 virus was from a person who had worked in Africa. Conclusion The results indicated that the person who came back from Africa had transmitted the subtype D of HIV1 from Africa to China.
出处 《中华实验和临床病毒学杂志》 CAS CSCD 1999年第2期157-162,共6页 Chinese Journal of Experimental and Clinical Virology
关键词 HIV NESTED-PCR 序列分析 系统树分析 IV SubtypeSequence analysisNestedPCRPhylogenetic tree
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