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基于联合残基力场的蛋白质能量优化

Protein energy minimization based on UNRES
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摘要 简述了蛋白质结构预测中存在的问题,主要介绍了蛋白质分子力场的一种模型即联合残基力场,然后利用这种模型对一种多肽和葡萄球菌蛋白的部分段进行试验,使它们的能量不同程度的得到了最小化,其中前者的初始能量为-71.50461kcal/mol,最小化后为-73.32767kcal/mol. A brief summary of the problems in protein structure prediction is give at first,then united residue force field is introduced and based on this force field energy minimization of Ac - Ala19 - NHMe and the 10 - 55 fragment of the B - domain of staphylococcal protein A is carried out.The energy of staphylococcal protein A fragment before and after are respectively - 81.31822 kcal/moland - 144.8705 keal/mol, which justifies the validity of UNRES.
出处 《生物信息学》 2005年第3期130-132,共3页 Chinese Journal of Bioinformatics
基金 河南省自然科学基金资助项目(0211050900)
关键词 蛋白质结构预测 联合残基力场 能量最小化 Protein structure prediction UNRES,energy minmization
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