Stream cipher, DNA cryptography and DNA analysis are the most important R&D fields in both Cryptography and Bioinformatics. HC-256 is an emerged scheme as the new generation of stream ciphers for advanced network ...Stream cipher, DNA cryptography and DNA analysis are the most important R&D fields in both Cryptography and Bioinformatics. HC-256 is an emerged scheme as the new generation of stream ciphers for advanced network security. From a random sequencing viewpoint, both sequences of HC-256 and real DNA data may have intrinsic pseudo-random properties respectively. In a recent decade, many DNA sequencing projects are developed on cells, plants and animals over the world into huge DNA databases. Researchers notice that mammalian genomes encode thousands of large noncoding RNAs (lncRNAs), interact with chromatin regulatory complexes, and are thought to play a role in localizing these complexes to target loci across the genome. It is a challenge target using higher dimensional visualization tools to organize various complex interactive properties as visual maps. The Variant Map System (VMS) as an emerging scheme is systematically proposed in this paper to apply multiple maps that used four Meta symbols as same as DNA or RNA representations. System architecture of key components and core mechanism on the VMS are described. Key modules, equations and their I/O parameters are discussed. Applying the VM System, two sets of real DNA sequences from both sample human (noncoding DNA) and corn (coding DNA) genomes are collected in comparison with pseudo DNA sequences generated by HC-256 to show their intrinsic properties in higher levels of similar relationships among relevant DNA sequences on 2D maps. Sample 2D maps are listed and their characteristics are illustrated under controllable environment. Visual results are briefly analyzed to explore their intrinsic properties on selected genome sequences.展开更多
Based on former studies on weather simulator modules in IPMist laboratory, study on visual programming of stochastic weather generator(VS-WGEN)was continued. In this study, Markov Chain, Monte Carlo, Fourier Series, a...Based on former studies on weather simulator modules in IPMist laboratory, study on visual programming of stochastic weather generator(VS-WGEN)was continued. In this study, Markov Chain, Monte Carlo, Fourier Series, and weak stationary process were used to generate the daily weather data in software Matlab 6. 0, with the data input from 40 years' weather data recorded by Beijing Weather Station. The generated data includes daily maximum temperature, minimum temperature, precipitation and solar radiation. It has been verified that the weather data generated by the VS-WGEN were more accurate than that by the old WGEN, when twenty new model parameters were included. VS-WGEN has wide software applications, such as pest risk analysis, pest forecast and management. It can be implemented in hardware development as well, such as weather control in weather chamber and greenhouse for researches on ecological adaptation of crop varieties to a given location over time and space. Overall, VS-WGEN is a very useful tool for studies on theoretical and applied ecology.展开更多
文摘Stream cipher, DNA cryptography and DNA analysis are the most important R&D fields in both Cryptography and Bioinformatics. HC-256 is an emerged scheme as the new generation of stream ciphers for advanced network security. From a random sequencing viewpoint, both sequences of HC-256 and real DNA data may have intrinsic pseudo-random properties respectively. In a recent decade, many DNA sequencing projects are developed on cells, plants and animals over the world into huge DNA databases. Researchers notice that mammalian genomes encode thousands of large noncoding RNAs (lncRNAs), interact with chromatin regulatory complexes, and are thought to play a role in localizing these complexes to target loci across the genome. It is a challenge target using higher dimensional visualization tools to organize various complex interactive properties as visual maps. The Variant Map System (VMS) as an emerging scheme is systematically proposed in this paper to apply multiple maps that used four Meta symbols as same as DNA or RNA representations. System architecture of key components and core mechanism on the VMS are described. Key modules, equations and their I/O parameters are discussed. Applying the VM System, two sets of real DNA sequences from both sample human (noncoding DNA) and corn (coding DNA) genomes are collected in comparison with pseudo DNA sequences generated by HC-256 to show their intrinsic properties in higher levels of similar relationships among relevant DNA sequences on 2D maps. Sample 2D maps are listed and their characteristics are illustrated under controllable environment. Visual results are briefly analyzed to explore their intrinsic properties on selected genome sequences.
基金supported jointly by the grant of Project“973”:Fundamental Studies on Invasion and Control of Extra Pest(2002CB111400)the grant of Key Project of Ministry of Science and Technology of China:Development of New Technologies for Pest Forecasting(2001BA50PB01).
文摘Based on former studies on weather simulator modules in IPMist laboratory, study on visual programming of stochastic weather generator(VS-WGEN)was continued. In this study, Markov Chain, Monte Carlo, Fourier Series, and weak stationary process were used to generate the daily weather data in software Matlab 6. 0, with the data input from 40 years' weather data recorded by Beijing Weather Station. The generated data includes daily maximum temperature, minimum temperature, precipitation and solar radiation. It has been verified that the weather data generated by the VS-WGEN were more accurate than that by the old WGEN, when twenty new model parameters were included. VS-WGEN has wide software applications, such as pest risk analysis, pest forecast and management. It can be implemented in hardware development as well, such as weather control in weather chamber and greenhouse for researches on ecological adaptation of crop varieties to a given location over time and space. Overall, VS-WGEN is a very useful tool for studies on theoretical and applied ecology.
