Collagen from tendon of Yezo sika deer was prepared by limited pepsin digestion. The yield of collagen was very high;35.7% on the basis of lyophilized dry weight. The secondary structure of this collagen was different...Collagen from tendon of Yezo sika deer was prepared by limited pepsin digestion. The yield of collagen was very high;35.7% on the basis of lyophilized dry weight. The secondary structure of this collagen was different from that of porcine skin by ATR-FTIR analysis, although it was the same characteristics, e.g. SDS-PAGE, subunit composition, ther-mal behavior, as porcine collagen. Since taking up a problem of bovine spongiform encephalopathy infection in land animals such as calf or bovine, collagen from aquatic materials has been used in various industries. However, the present study indicates that tendon of Yezo sika deer as by-product of meat industry will have potential as an important collagen source for use in the foods, cosmetics, and medical fields.展开更多
Sika deer are known to prefer oak leaves,which are rich in tannins and toxic to most mammals;however,the genetic mechanisms underlying their unique ability to adapt to living in the jungle are still unclear.In identif...Sika deer are known to prefer oak leaves,which are rich in tannins and toxic to most mammals;however,the genetic mechanisms underlying their unique ability to adapt to living in the jungle are still unclear.In identifying the mechanism responsible for the tolerance of a highly toxic diet,we have made a major advancement by explaining the genome of sika deer.We generated the first high-quality,chromosome-level genome assembly of sika deer and measured the correlation between tannin intake and RNA expression in 15 tissues through 180 experiments.Comparative genome analyses showed that the UGT and CYP gene families are functionally involved in the adaptation of sika deer to high-tannin food,especially the expansion of the UGT family 2 subfamily B of UGT genes.The first chromosome-level assembly and genetic characterization of the tolerance to a highly toxic diet suggest that the sika deer genome may serve as an essential resource for understanding evolutionary events and tannin adaptation.Our study provides a paradigm of comparative expressive genomics that can be applied to the study of unique biological features in non-model animals.展开更多
A study was conducted on the identifications of the degraded samples of sika deer （Cervus nippon） and red deer （Cervus elaphus） by phylogenetic and nucleotide distance analysis of partial Cytb and 12s rRNA genes s...A study was conducted on the identifications of the degraded samples of sika deer （Cervus nippon） and red deer （Cervus elaphus） by phylogenetic and nucleotide distance analysis of partial Cytb and 12s rRNA genes sequences. 402 bp Cytb genes were achieved by PCR-sequencing using DNA extracted from 8 case samples, and contrasted with 27 sequences of Cytb gene downloaded from GenBank database. The values of three nucleotide distance between three suspected samples and sika deer were identical （0.026±0.006）, which was smaller than the smallest nucleotide distance between eastern red deer and sika deer （0.036）. Furthermore, phylogenetic analysis of sika deer and red deer indicated that the evidences located within the same cluster as sika deer. The evidences were sika deer materials. As the same way, other three suspected samples were derived from red deer. The results were further confirmed by phylogenetic and nucleotide distance analysis of 387 bp 12s rRNA gene. The method was powerful and less time-consuming and helpful to reduce the related cases with wildlife.展开更多
Behaviors of sika deer in spring were studied by scan sampling, ad libitum sampling, and all-occurrence recording methods during 1998. The results showed that behaviors of sika deer in spring can be classified by seve...Behaviors of sika deer in spring were studied by scan sampling, ad libitum sampling, and all-occurrence recording methods during 1998. The results showed that behaviors of sika deer in spring can be classified by seven categories: grazing, ruminating, bedding, moving, standing, drinking, alert, agonistic and other behaviors. Various behavioral models were more regular. Grazing behavior was a kind of mainly behavioral model.展开更多
To determine the effects of sika deer (Cervus nippon) browsing on the physical defences of the Japanese pricklyash “Zanthoxylum ailanthoides Sieb. et Zucc.” (Rutaceae), we compared the length and density of prickles...To determine the effects of sika deer (Cervus nippon) browsing on the physical defences of the Japanese pricklyash “Zanthoxylum ailanthoides Sieb. et Zucc.” (Rutaceae), we compared the length and density of prickles on Japanese islands which were under different browsing pressures. We measured the length and density of prickles on the midribs, leaf rachis, and stems. We found that the prickles of Z. ailanthoides on Kashima island were not significantly longer or at higher densities than those in the neighbouring areas;the longest pickles at the highest densities were found on Akune island. The density of sika deer on Akune (ca. 520-600/km2) was higher than that on Kashima (ca. 38.5/km2), and consequently, Akune was under greater browsing pressure. Our results suggest that the increased length and density of prickles on Akune is a response by Z. ailanthoides to the high density of sika deer found on the island.展开更多
To clarify the modification of physical defences of Glochidion obovatum Sieb. et Zucc., we compared the length of spine-like branches and frequency of lateral branches of G. obovatum between Kashima Island, which supp...To clarify the modification of physical defences of Glochidion obovatum Sieb. et Zucc., we compared the length of spine-like branches and frequency of lateral branches of G. obovatum between Kashima Island, which supports a high density of sika deer (Cervus nippon), and its neighbouring areas. The length of spine-like branches of G. obovatum in Kashima Island was not significantly longer than that of the neighbouring areas, but the frequency of lateral branches on the island was higher than that of the neighbouring areas. Since the branches of G. obovatum are heavily foraged by the sika deer, the shrub form of the species has evolved into the bonsai form, suggesting increased frequency of occurrence of lateral branches, which could develop as shoot-like branches. Thus, the observed features are facultative defence mechanisms of G. obovatum against heavy browsing in a small-sized island with very high density of sika deer.展开更多
文摘Collagen from tendon of Yezo sika deer was prepared by limited pepsin digestion. The yield of collagen was very high;35.7% on the basis of lyophilized dry weight. The secondary structure of this collagen was different from that of porcine skin by ATR-FTIR analysis, although it was the same characteristics, e.g. SDS-PAGE, subunit composition, ther-mal behavior, as porcine collagen. Since taking up a problem of bovine spongiform encephalopathy infection in land animals such as calf or bovine, collagen from aquatic materials has been used in various industries. However, the present study indicates that tendon of Yezo sika deer as by-product of meat industry will have potential as an important collagen source for use in the foods, cosmetics, and medical fields.
基金This work was supported by the National Key R&D Program of China(Grant No.2018YFD0502204)the Agricultural Science and Technology Innovation Program of China(Grant No.CAAS-ASTIP-2019-ISAPS)+1 种基金the Special Animal Genetic Resources Platform of National Scientific and Technical Infrastructure Center(Grant No.NSTIC TZDWZYK2019)the Sika deer Genome Project of China(Grant No.20140309016YY).
文摘Sika deer are known to prefer oak leaves,which are rich in tannins and toxic to most mammals;however,the genetic mechanisms underlying their unique ability to adapt to living in the jungle are still unclear.In identifying the mechanism responsible for the tolerance of a highly toxic diet,we have made a major advancement by explaining the genome of sika deer.We generated the first high-quality,chromosome-level genome assembly of sika deer and measured the correlation between tannin intake and RNA expression in 15 tissues through 180 experiments.Comparative genome analyses showed that the UGT and CYP gene families are functionally involved in the adaptation of sika deer to high-tannin food,especially the expansion of the UGT family 2 subfamily B of UGT genes.The first chromosome-level assembly and genetic characterization of the tolerance to a highly toxic diet suggest that the sika deer genome may serve as an essential resource for understanding evolutionary events and tannin adaptation.Our study provides a paradigm of comparative expressive genomics that can be applied to the study of unique biological features in non-model animals.
文摘A study was conducted on the identifications of the degraded samples of sika deer （Cervus nippon） and red deer （Cervus elaphus） by phylogenetic and nucleotide distance analysis of partial Cytb and 12s rRNA genes sequences. 402 bp Cytb genes were achieved by PCR-sequencing using DNA extracted from 8 case samples, and contrasted with 27 sequences of Cytb gene downloaded from GenBank database. The values of three nucleotide distance between three suspected samples and sika deer were identical （0.026±0.006）, which was smaller than the smallest nucleotide distance between eastern red deer and sika deer （0.036）. Furthermore, phylogenetic analysis of sika deer and red deer indicated that the evidences located within the same cluster as sika deer. The evidences were sika deer materials. As the same way, other three suspected samples were derived from red deer. The results were further confirmed by phylogenetic and nucleotide distance analysis of 387 bp 12s rRNA gene. The method was powerful and less time-consuming and helpful to reduce the related cases with wildlife.
文摘Behaviors of sika deer in spring were studied by scan sampling, ad libitum sampling, and all-occurrence recording methods during 1998. The results showed that behaviors of sika deer in spring can be classified by seven categories: grazing, ruminating, bedding, moving, standing, drinking, alert, agonistic and other behaviors. Various behavioral models were more regular. Grazing behavior was a kind of mainly behavioral model.
文摘To determine the effects of sika deer (Cervus nippon) browsing on the physical defences of the Japanese pricklyash “Zanthoxylum ailanthoides Sieb. et Zucc.” (Rutaceae), we compared the length and density of prickles on Japanese islands which were under different browsing pressures. We measured the length and density of prickles on the midribs, leaf rachis, and stems. We found that the prickles of Z. ailanthoides on Kashima island were not significantly longer or at higher densities than those in the neighbouring areas;the longest pickles at the highest densities were found on Akune island. The density of sika deer on Akune (ca. 520-600/km2) was higher than that on Kashima (ca. 38.5/km2), and consequently, Akune was under greater browsing pressure. Our results suggest that the increased length and density of prickles on Akune is a response by Z. ailanthoides to the high density of sika deer found on the island.
文摘To clarify the modification of physical defences of Glochidion obovatum Sieb. et Zucc., we compared the length of spine-like branches and frequency of lateral branches of G. obovatum between Kashima Island, which supports a high density of sika deer (Cervus nippon), and its neighbouring areas. The length of spine-like branches of G. obovatum in Kashima Island was not significantly longer than that of the neighbouring areas, but the frequency of lateral branches on the island was higher than that of the neighbouring areas. Since the branches of G. obovatum are heavily foraged by the sika deer, the shrub form of the species has evolved into the bonsai form, suggesting increased frequency of occurrence of lateral branches, which could develop as shoot-like branches. Thus, the observed features are facultative defence mechanisms of G. obovatum against heavy browsing in a small-sized island with very high density of sika deer.
