为加速分子标记在芝麻研究中的应用,利用网上现有的芝麻EST(expressed sequencetags)数据信息,开展了芝麻EST-SSR功能性标记的开发和利用研究。在所有的3328条芝麻EST序列中共确认得到1785条非冗余EST序列。其中,在含有微卫星重复的148...为加速分子标记在芝麻研究中的应用,利用网上现有的芝麻EST(expressed sequencetags)数据信息,开展了芝麻EST-SSR功能性标记的开发和利用研究。在所有的3328条芝麻EST序列中共确认得到1785条非冗余EST序列。其中,在含有微卫星重复的148条序列中共检测有155个EST-SSR。非冗余EST序列总长为774.27kb,平均每4.99kb含有一个EST-SSR。EST-SSR的分布频率和特征分析表明,以AG/TC为重复基元(motif)的SSR出现最多,占总SSR的37.42%。利用这些序列,设计开发了50对EST-SSR引物,并分别选用36个芝麻、2个棉花、2个大豆和2个油葵进行多态性和通用性研究。其中44对引物在供试芝麻材料中扩增出条带,共产生108个位点,平均每对引物产生2.45个位点,多态信息含量(polymorphism information content,PIC)平均值为0.390。根据遗传相似性系数进行聚类,有26个芝麻材料聚类在两个大的亚类(III和IV)中,聚类结果表明芝麻的基因型与地理来源之间没有必然的联系。此外,分别有2对、3对和4对引物可以在棉花、大豆和油葵中进行通用性扩增。本研究证实这种全新开发的芝麻EST-SSR标记在芝麻遗传多样性分析、遗传图谱构建以及比较基因组等研究方面有广阔的利用前景。展开更多
SRAP （sequence-related amplified polymorphism） was used for the analysis of 67 sesame （Sesamum indicum L.） cultivars widely used in Chinese sesame major production areas from 1950 to 2007. A total of 561 bands wer...SRAP （sequence-related amplified polymorphism） was used for the analysis of 67 sesame （Sesamum indicum L.） cultivars widely used in Chinese sesame major production areas from 1950 to 2007. A total of 561 bands were amplified using 21 SRAP random primer pairs, with 265 of them were polymorphic, resulting in a polymorphism ratio of 47.2%. The total bands and polymorphism amplified by each primer pair averaged 26.7 and 12.6, respectively. The average genetic similar coefficient and genetic distance of the 67 cultivars were 0.9104 and 0.0706, respectively, indicating limited genetic diversity and narrow genetic basis. Comparative analysis on genetic similarity and genetic distance of different classified cultivars showed that the difference of average genetic similarity coefficient and genetic distance between the landraces and cultivars bred through crosses reached significant levels （P=0.01）, with the genetic basis of landraces wider than that bred cultivars. The genetic basis of cultivars used in 1990-2007 was more narrow than that of cultivars from 1950 to 1969 and from 1970 to 1989, with the differences of average genetic similarity coefficient and genetic distance reached 0.01 significant level. The genetic basis of Chinese sesame main cultivars is relatively narrow, and the genetic basis of cultivars developed through crosses in recent years is narrower than history cultivars.展开更多
文摘为加速分子标记在芝麻研究中的应用,利用网上现有的芝麻EST(expressed sequencetags)数据信息,开展了芝麻EST-SSR功能性标记的开发和利用研究。在所有的3328条芝麻EST序列中共确认得到1785条非冗余EST序列。其中,在含有微卫星重复的148条序列中共检测有155个EST-SSR。非冗余EST序列总长为774.27kb,平均每4.99kb含有一个EST-SSR。EST-SSR的分布频率和特征分析表明,以AG/TC为重复基元(motif)的SSR出现最多,占总SSR的37.42%。利用这些序列,设计开发了50对EST-SSR引物,并分别选用36个芝麻、2个棉花、2个大豆和2个油葵进行多态性和通用性研究。其中44对引物在供试芝麻材料中扩增出条带,共产生108个位点,平均每对引物产生2.45个位点,多态信息含量(polymorphism information content,PIC)平均值为0.390。根据遗传相似性系数进行聚类,有26个芝麻材料聚类在两个大的亚类(III和IV)中,聚类结果表明芝麻的基因型与地理来源之间没有必然的联系。此外,分别有2对、3对和4对引物可以在棉花、大豆和油葵中进行通用性扩增。本研究证实这种全新开发的芝麻EST-SSR标记在芝麻遗传多样性分析、遗传图谱构建以及比较基因组等研究方面有广阔的利用前景。
基金supported by the Project of National Plant Germplasm Resources Protection of Ministry of Agriculture of China (NB05-070401-30)the National Key Technologies R&D Programof China(2006BAD13B05-2)the Special Program for Na-tional Public Service Vocations (Agriculture) Research(nyhyzx07-015-2), China
文摘SRAP （sequence-related amplified polymorphism） was used for the analysis of 67 sesame （Sesamum indicum L.） cultivars widely used in Chinese sesame major production areas from 1950 to 2007. A total of 561 bands were amplified using 21 SRAP random primer pairs, with 265 of them were polymorphic, resulting in a polymorphism ratio of 47.2%. The total bands and polymorphism amplified by each primer pair averaged 26.7 and 12.6, respectively. The average genetic similar coefficient and genetic distance of the 67 cultivars were 0.9104 and 0.0706, respectively, indicating limited genetic diversity and narrow genetic basis. Comparative analysis on genetic similarity and genetic distance of different classified cultivars showed that the difference of average genetic similarity coefficient and genetic distance between the landraces and cultivars bred through crosses reached significant levels （P=0.01）, with the genetic basis of landraces wider than that bred cultivars. The genetic basis of cultivars used in 1990-2007 was more narrow than that of cultivars from 1950 to 1969 and from 1970 to 1989, with the differences of average genetic similarity coefficient and genetic distance reached 0.01 significant level. The genetic basis of Chinese sesame main cultivars is relatively narrow, and the genetic basis of cultivars developed through crosses in recent years is narrower than history cultivars.
