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酵母核苷酸对鲤生长性能、体组成及血清免疫指标的影响 被引量:17
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作者 向枭 周兴华 +1 位作者 陈建 郑宗林 《动物营养学报》 CAS CSCD 北大核心 2011年第1期171-178,共8页
本试验旨在研究酵母核苷酸对鲤生长性能、体组成及血清免疫指标的影响。以600尾健康的鲤[平均体重(1.09±0.07)g;平均体长(3.60±0.34)cm]为试验对象,随机分为6组(每组3个重复,每个重复30尾),分别投喂在基础饲料中添加0(对照组)... 本试验旨在研究酵母核苷酸对鲤生长性能、体组成及血清免疫指标的影响。以600尾健康的鲤[平均体重(1.09±0.07)g;平均体长(3.60±0.34)cm]为试验对象,随机分为6组(每组3个重复,每个重复30尾),分别投喂在基础饲料中添加0(对照组)、258、516、774、1032、1290mg/kg酵母核苷酸(以有效成分计)的试验饲料,养殖50d。结果表明:与对照组相比,各酵母核苷酸添加组的增重率(WGR)、特定生长率(SGR)、蛋白质效率(PER)(258mg/kg组除外)均显著升高(P<0.05),饵料系数(FCR)则显著降低(P<0.05)。当酵母核苷酸添加量为516mg/kg时,鲤的增重率、特定生长率、蛋白质效率均达到最大(分别为372.03%、3.10%/d和195.74%),饵料系数达到最低(1.42),与其他各组差异显著(P<0.05)。以增重率、特定生长率、蛋白质效率及饵料系数为指标,利用折线模型分析表明,鲤生长性能最佳时酵母核苷酸添加量为519.85~535.54mg/kg。对鲤体组成分析表明,酵母核苷酸对鱼体粗灰分和水分含量影响不显著(P>0.05),当酵母核苷酸添加量在516~1290mg/kg时鱼体粗蛋白质和粗脂肪含量显著高于对照组(P<0.05)。与对照组相比,各酵母核苷酸添加组的血清溶菌酶、超氧化歧化酶、过氧化氢酶活性显著升高(P<0.05),并随酵母核苷酸水平的增加先增加后降低。酵母核苷酸添加量为774~1290mg/kg时,血清溶菌酶、超氧化歧化酶活性较高;在酵母核苷酸添加量为516~1032mg/kg时,血清过氧化氢酶活性较高。综合考虑生长性能和免疫能力,鲤饲料中酵母核苷酸的适宜添加量为519.85~774.00mg/kg。 展开更多
关键词 酵母核苷酸 生长性能 体组成 免疫指标
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九种绢丝昆虫线粒体12S rRNA基因的序列特征和系统发育分析 被引量:10
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作者 刘彦群 靳向东 +2 位作者 秦利 鲁成 向仲怀 《昆虫学报》 CAS CSCD 北大核心 2008年第3期307-314,共8页
为探讨鳞翅目中绢丝昆虫之间的系统发育关系和分子进化特征,本研究测定了中国柞蚕Antheraea pernyi野生型和放养型的线粒体12SrRNA基因的部分序列,结合来自GenBank数据库的17条序列,对总共9种绢丝昆虫(2科3属)的12SrRNA基因序列进行了... 为探讨鳞翅目中绢丝昆虫之间的系统发育关系和分子进化特征,本研究测定了中国柞蚕Antheraea pernyi野生型和放养型的线粒体12SrRNA基因的部分序列,结合来自GenBank数据库的17条序列,对总共9种绢丝昆虫(2科3属)的12SrRNA基因序列进行了分析。利用软件MEGA3.1进行碱基组成、变异位点的统计和分子进化分析,分别用类平均聚类法((UPGMA)、邻接法(NJ)、最小进化法(ME)、最大简约法(MP)重建系统发生树。测定的中国柞蚕野生型的12SrRNA基因序列(427bp)与放养型"豫早1号"的序列完全一致。序列对齐后共鉴定80个变异位点,50个简约信息位点。碱基组成分析显示在科属间具有明显差异,AT含量蚕蛾科高于大蚕蛾科;在A和T碱基的使用上,大蚕蛾科偏好使用T,而蚕蛾科则偏好使用A。与动物中常见的以转换为主的碱基替换模式不同,所分析的9种昆虫中除桑蚕属内部为转换与颠换基本一致外,其余物种间均是颠换多于转换。进化分析支持柞蚕属、樗蚕属和桑蚕属的单系。基于UPGMA法的进化树支持琥珀蚕是柞蚕属的较原始类型,而NJ、ME和MP法则支持印度柞蚕是较原始的类型,因此,柞蚕属种间的进化关系尚需进一步研究。 展开更多
关键词 绢丝昆虫 蚕蛾科 大蚕蛾科 12S RRNA基因 碱基组成 替换模式 系统发生关系
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乳中核苷酸的分析及其对婴幼儿营养功能的研究 被引量:8
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作者 方芳 李婷 安颖 《食品研究与开发》 CAS 北大核心 2015年第8期135-139,共5页
阐述了人乳、牛乳中核苷酸的组成,分析了核苷酸在体内的吸收、代谢,并对核苷酸对婴儿的生物功能作了综述。从核苷酸组成看,乳清酸是牛乳中主要的核苷酸成分,其他核苷酸含量很少;而人乳中的核苷酸成分主要是胞嘧啶核苷酸。核苷酸进入肠道... 阐述了人乳、牛乳中核苷酸的组成,分析了核苷酸在体内的吸收、代谢,并对核苷酸对婴儿的生物功能作了综述。从核苷酸组成看,乳清酸是牛乳中主要的核苷酸成分,其他核苷酸含量很少;而人乳中的核苷酸成分主要是胞嘧啶核苷酸。核苷酸进入肠道后,在小肠上皮细胞中被酶降解,多数以呼吸和尿液的形式排出体外,少部分通过血液传递到身体各组织,参与机体的合成。对于乳中的核苷酸的生物功能主要集中在改善肠道菌群,促进生长发育,提高免疫能力,改善脂质代谢等。2005年中国卫生部正式允许婴儿粉中添加核苷酸,我国对核苷酸的应用也逐步开始。 展开更多
关键词 核苷酸 婴儿配方粉 组成 功能
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球孢白僵菌基因组密码子使用模式及其影响因素分析 被引量:5
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作者 张瑞芝 陈章宝 +2 位作者 陈德敏 渠铮 向恒 《西南大学学报(自然科学版)》 CAS CSCD 北大核心 2018年第5期66-74,共9页
球孢白僵菌Beauveria bassiana是一类成功用于全球生物防治的重要病原真菌,这是由于其宿主范围广及毒力多样化特性决定的.利用球孢白僵菌已公布全基因组数据,开展密码子使用偏好分析,以理解其基因组特征和宿主适应性.尽管通过密码子指数... 球孢白僵菌Beauveria bassiana是一类成功用于全球生物防治的重要病原真菌,这是由于其宿主范围广及毒力多样化特性决定的.利用球孢白僵菌已公布全基因组数据,开展密码子使用偏好分析,以理解其基因组特征和宿主适应性.尽管通过密码子指数CAI,CBI,ENc的计算,认为球孢白僵菌密码子使用偏性较弱.但根据RSCU值鉴定最优密码子,发现球孢白僵菌基因组强烈偏好使用第三位碱基G/C的密码子,尤其是C结尾的密码子.对密码子第三位碱基进行PR2分析,发现球孢白僵菌密码子偏好性还表现在倾向于使用嘧啶结尾密码子,即U使用频率高于A,C使用频率高于G.该偏好模式通过相关性分析,认为核苷酸组成是影响球孢白僵菌密码子偏好性的一个重要因素.而ENc图和对应分析则表明除核苷酸组成外,球孢白僵菌密码子使用偏好还受到基因功能及其他多种因素的影响.中性绘图分析认为,球孢白僵菌密码子使用偏好受到外界选择下的定向突变压力作用,并推测该选择来自于其宿主.而该定向突变压力也是加快球孢白僵菌自身基因组进化和毒力多样化的一种动力,使其能适应在700多种昆虫宿主中寄生. 展开更多
关键词 球孢白僵菌 密码子使用偏好 定向突变压力 核苷酸组成
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Favorable and unfavorable amino acid residues in water-soluble and transmembrane proteins
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作者 Hiroshi Nakashima Ayano Yoshihara Kei-ichiro Kitamura 《Journal of Biomedical Science and Engineering》 2013年第1期36-44,共9页
We analyzed the amino acid residues present in the water-soluble and transmembrane proteins of 6 thermophilic and 6 mesophilic species of the domains Archaea and Eubacteria, and characterized them as favorable or unfa... We analyzed the amino acid residues present in the water-soluble and transmembrane proteins of 6 thermophilic and 6 mesophilic species of the domains Archaea and Eubacteria, and characterized them as favorable or unfavorable. The characterization was performed by comparing the observed number of each amino acid residue to the expected number calculated from the percentage of nucleotides present in each gene. Amino acids that were more or less abundant than expected were considered as favorable or unfavorable, respectively. Comparisons of amino acid compositions indicated that the water-soluble proteins were rich in charged residues such as Glu, Asp, Lys, and His, whereas hydrophobic residues such as Trp, Phe, and Leu were abundant in transmembrane proteins. Interestingly, our results found that although the Trp residue was abundant in transmembrane proteins, it was not defined as favorable by our calculations, indicating that increased numbers of a particular amino acid does not necessary indicate it is a favorable residue. Amino acids with high G + C content such as Ala, Gly, and Pro were frequently observed as favorable in species with low G + C content. Comparatively, amino acids with low G + C content such as Phe, Tyr, Lys, Ile, and Met were frequently observed as favorable in species with high G + C content. These are the examples to increase the supply of amino acids than expected. Amino acids with neutral G + C content, i.e., Glu and Asp were favorable in water-soluble proteins from all species analyzed, and Cys was unfavorable both in water-soluble and transmembrane proteins. These results indicate that amino acid compositions are essentially determined by the nucleotide sequence of the genes, and the amino acid content is altered by a deviation from expectation. 展开更多
关键词 Amino Acid composition nucleotide composition Favorable and Unfavorable Residues WATER-SOLUBLE and TRANSMEMBRANE Proteins THERMOPHILIC and MESOPHILIC Species
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Mitochondrial cytochrome oxidase 1 reveals genetic diversity of the African Snakehead fish Parachanna obscura,Gunther,1861 from Nigeria’s freshwater environment 被引量:1
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作者 Friday Elijah Osho Bamidele Oluwarotimi Omitoyin +2 位作者 Emmanuel Kolawole Ajani Victor O.Azuh Adedapo Olutola Adediji 《Aquaculture and Fisheries》 CSCD 2023年第1期59-66,共8页
The study investigated the genetic variation of Parachanna obscura from five rivers(Anambra,Ibbi,Imo,Katsina-Ala and Ogun)in Nigeria using the mitochondrial cytochrome oxidase 1 gene.DNA was extracted from 19,22,16,18... The study investigated the genetic variation of Parachanna obscura from five rivers(Anambra,Ibbi,Imo,Katsina-Ala and Ogun)in Nigeria using the mitochondrial cytochrome oxidase 1 gene.DNA was extracted from 19,22,16,18 and 21 fin clips per river population,respectively and subjected to polymerase chain reaction.A total of 96 sequences,each with 671 bp were obtained with 38(5.6%)polymorphic,27(3.8%)parsimoniously informative and 659(98.2%)conserved sites.Mean nucleotide composition was C=28.07%,T=29.43%,A=22.18%,G=20.32%.A total of 40 haplotypes with 38 unique sequences as well as 24 substitutions with 22 transversions and two transitions were obtained.Nucleotide diversity among populations ranged from 0.00184 to 0.00888 representing Ibbi and Imo,respectively while haplotype diversity ranged from 0.77056 to 0.95000 also,from Ibbi and Imo,respectively.Analyses of molecular variance showed that the intra-population variation accounted for 50.05%.Topology from phylogenetic analyses revealed that P.obscura from Imo River was distinctly different from the rest. 展开更多
关键词 nucleotide composition Haplotype diversity Molecular variance Phylogenetic analysis Topology
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林氏按蚊线粒体全基因组序列的测定及基于线粒体基因组的按蚊属系统发育分析(英文) 被引量:2
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作者 毛启萌 李廷景 +2 位作者 付文博 闫振天 陈斌 《昆虫学报》 CAS CSCD 北大核心 2019年第1期101-116,共16页
【目的】对林氏按蚊Anopheles lindesayi完整的线粒体基因组进行测序及分析,依据已知的线粒体基因组构建并讨论按蚊属蚊虫的分子系统发育关系。【方法】对林氏按蚊线粒体基因组进行测序、注释,并对其基本特征和基本组成进行分析。基于... 【目的】对林氏按蚊Anopheles lindesayi完整的线粒体基因组进行测序及分析,依据已知的线粒体基因组构建并讨论按蚊属蚊虫的分子系统发育关系。【方法】对林氏按蚊线粒体基因组进行测序、注释,并对其基本特征和基本组成进行分析。基于串联的13个蛋白质编码基因的核苷酸序列和氨基酸序列,用ML法和贝叶斯法构建林氏按蚊和按蚊属其他32种蚊虫的系统发育树,据此探讨按蚊属蚊虫的系统发育关系和系统分类。【结果】林氏按蚊线粒体基因组全长为15 366 bp,包含13个蛋白质编码基因,22个tR NA基因,2个rR NA基因和一段控制区。林氏按蚊线粒体基因组呈现明显的AT偏斜和GC偏斜,AT偏斜为正,GC偏斜为负。除了COX1使用TCG和ND5使用GTG作为起始密码子以外,其他蛋白质编码基因的起始密码子均遵循ATN原则;终止密码子为TAA或者T。除了tR NASer(AGN)以外,其他的tR NA基因均呈现典型的三叶草二级结构。控制区AT含量最高,为94. 54%。滑窗分析显示蛋白质编码基因是用于构建亚属或属水平系统发育关系的最佳分子标记。系统发育树强烈支持塞蚊亚属Cellia、按蚊亚属Anopheles、徕蚊亚属Nyssorhynchus和柯特蚊亚属Kerteszia均为单系群。小五斑按蚊An. atroparvus和四斑按蚊An. quadrimaculatus A这两个种聚到一起,从传统的形态分类上讲,它们和林氏按蚊均属于按蚊亚属按蚊系蚊虫。但本研究构建的4个系统发育树均显示,(小五斑按蚊An. atroparvus+四斑按蚊An. quadrimaculatus A)和林氏按蚊被属于迈蚊系的中华按蚊分开,这为两个系的分类提供了新的论点。【结论】本研究获得了林氏按蚊的完整的线粒体基因组,探析了按蚊属的线粒体基因组特征和系统发育关系,为进一步研究蚊科线粒体基因组和系统发育关系提供了依据。 展开更多
关键词 蚊科 按蚊属 林氏按蚊 线粒体基因组 核苷酸组成 系统发育
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Characterization and analysis of ribosomal proteins in two marine calanoid copepods 被引量:1
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作者 杨菲菲 徐东会 +5 位作者 庄昀筠 黄有松 衣晓燕 陈洪举 刘光兴 张寰 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2016年第6期1258-1268,共11页
Copepods are among the most abundant and successful metazoans in the marine ecosystem. However, genomic resources related to fundamental cellular processes are still limited in this particular group of crustaceans. Ri... Copepods are among the most abundant and successful metazoans in the marine ecosystem. However, genomic resources related to fundamental cellular processes are still limited in this particular group of crustaceans. Ribosomal proteins are the building blocks of ribosomes, the primary site for protein synthesis. In this study, we characterized and analyzed the c DNAs of cytoplasmic ribosomal proteins(c RPs) of two calanoid copepods, P seudodiaptomus poplesia and A cartia pacifi ca. We obtained 79 c RP c DNAs from P. poplesia and 67 from A. pacifi ca by c DNA library construction/sequencing and rapid amplifi cation of c DNA ends. Analysis of the nucleic acid composition showed that the copepod c RP-encoding genes had higher GC content in the protein-coding regions(CDSs) than in the untranslated regions(UTRs), and single nucleotide repeats(>3 repeats) were common, with "A" repeats being the most frequent, especially in the CDSs. The 3′-UTRs of the c RP genes were signifi cantly longer than the 5′-UTRs. Codon usage analysis showed that the third positions of the codons were dominated by C or G. The deduced amino acid sequences of the c RPs contained high proportions of positively charged residues and had high p I values. This is the fi rst report of a complete set of c RP-encoding genes from copepods. Our results shed light on the characteristics of c RPs in copepods, and provide fundamental data for further studies of protein synthesis in copepods. The copepod c RP information revealed in this study indicates that additional comparisons and analysis should be performed on different taxonomic categories such as orders and families. 展开更多
关键词 amino acid composition codon usage copepod nucleotide composition ribosomal protein
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In silico Analysis of the Potential Infection Mechanisms of Magnaporthe grisea from Horizontal Gene Transfer Hypothesis
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作者 Chunyang Li Ying Wang +5 位作者 Hao Peng Hejiao Bian Mingwei Min Longfei Chen Qian Liu Jinku Bao 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2009年第3期77-86,共10页
Horizontal gene transfer (HGT) has long been considered as a principal force for an organism to gain novel genes in genome evolution. Homology search, phylogenetic analysis and nucleotide composition analysis are th... Horizontal gene transfer (HGT) has long been considered as a principal force for an organism to gain novel genes in genome evolution. Homology search, phylogenetic analysis and nucleotide composition analysis are three major objective approaches to arguably determine the occurrence and directionality of HGT. Here, 21 genes that possess the potential to horizontal transfer were acquired from the whole genome of Magnaporthe grisea according to annotation, among which three candidate genes (corresponding protein accession numbers are EAA55123, EAA47200 and EAA52136) were selected for further analysis. According to BLAST homology results, we subsequently conducted phylogenetic analysis of the three candidate HGT genes. Moreover, nucleotide composition analysis was conducted to further validate these HGTs. In addition, the functions of the three candidate genes were searched in COG database. Consequently, we conclude that the gene encoding protein EAA55123 is transferred from Clostridium perfringens. Another HGT event is between EAA52136 and a certain metazoan's corresponding gene, but the direction remains uncertain. Yet, EAA47200 is not a transferred gene. 展开更多
关键词 Magnaporthe grisea infection mechanism horizontal gene transfer HOMOLOGY phylogenetic analysis nucleotide composition
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Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades 被引量:1
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作者 Xufei Teng Qianpeng Li +6 位作者 Zhao Li Yuansheng Zhang Guangyi Niu Jingfa Xiao Jun Yu Zhang Zhang Shuhui Song 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2020年第6期648-663,共16页
COVID-19 and its causative pathogen SARS-CoV-2 have rushed the world into a staggering pandemic in a few months,and a global fight against both has been intensifying.Here,we describe an analysis procedure where genome... COVID-19 and its causative pathogen SARS-CoV-2 have rushed the world into a staggering pandemic in a few months,and a global fight against both has been intensifying.Here,we describe an analysis procedure where genome composition and its variables are related,through the genetic code to molecular mechanisms,based on understanding of RNA replication and its feedback loop from mutation to viral proteome sequence fraternity including effective sites on the replicase-transcriptase complex.Our analysis starts with primary sequence information,identity-based phylogeny based on 22,051 SARS-CoV-2 sequences,and evaluation of sequence variation patterns as mutation spectra and its 12 permutations among organized clades.All are tailored to two key mechanisms:strand-biased and function-associated mutations.Our findings are listed as follows:1)The most dominant mutation is C-to-U permutation,whose abundant second-codon-position counts alter amino acid composition toward higher molecular weight and lower hydrophobicity,albeit assumed most slightly deleterious.2)The second abundance group includes three negative-strand mutations(U-to-C,A-to-G,and G-to-A)and a positive-strand mutation(G-to-U)due to DNA repair mechanisms after cellular abasic events.3)A clade-associated biased mutation trend is found attributable to elevated level of negative-sense strand synthesis.4)Within-clade permutation variation is very informative for associating non-synonymous mutations and viral proteome changes.These findings demand a platform where emerging mutations are mapped onto mostly subtle but fast-adjusting viral proteomes and transcriptomes,to provide biological and clinical information after logical convergence for effective pharmaceutical and diagnostic applications.Such actions are in desperate need,especially in the middle of the War against COVID-19. 展开更多
关键词 SARS-CoV-2 nucleotide composition Mutation spectrum Viral replication
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高效液相色谱法测定tRNA^(Ile)的核苷酸组成 被引量:1
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作者 彭朝晖 Kuniko Kusama-Eguchi KazueiIgarashi 《第一军医大学学报》 CSCD 1993年第3期208-211,共4页
用高效液相色谱法(HPLC)分析了纯化的牛肝tRNA^(He)核苷酸组成成份,并根据各成份的峰的面积计算了它们的近似数量。实验表明牛肝tRNA^(He)有76个核苷酸,其中含9种14个稀有碱基。t^6A不能被发现。
关键词 牛肝 核苷酸 高效液相色谱 TRNA
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密码子使用偏性量化方法研究综述 被引量:47
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作者 唐晓芬 陈莉 马玉韬 《基因组学与应用生物学》 CAS CSCD 北大核心 2013年第5期660-666,共7页
在基因组学水平上研究密码子使用偏性模式、成因并分析进化过程中的选择压力在基因组学研究中有重要意义。文章概述了目前提出的密码子使用偏性的量化方法及实现原理。目前研究发现:有些量化密码子偏性的方法受高表达基因参考数据集未... 在基因组学水平上研究密码子使用偏性模式、成因并分析进化过程中的选择压力在基因组学研究中有重要意义。文章概述了目前提出的密码子使用偏性的量化方法及实现原理。目前研究发现:有些量化密码子偏性的方法受高表达基因参考数据集未完全注释的限制,不同密码子位置对变异和选择的影响不同,以及不同密码子位置处GC含量和嘌呤含量的贡献不同。由此展望密码子偏性量化方法发展方向为:需要设计不需要相关参考基因集合先验知识的密码子使用偏性量化方法;考虑不同位置处背景核苷酸组成的密码子使用偏性的量化方法;同时考虑基因表达水平的密码子使用偏性量化方法。最后,归纳了目前可用的密码子使用偏性的量化工具和数据库。 展开更多
关键词 同义密码子 密码子使用偏性 背景核苷酸 GC3 高表达基因
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动物线粒体编码序列相邻碱基组成对核苷酸替换的影响 被引量:11
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作者 刘运强 廖顺尧 +2 位作者 鲁成 周泽扬 向仲怀 《西南农业大学学报(自然科学版)》 CSCD 北大核心 2001年第3期270-272,共3页
核苷酸替换偏好性受其相邻碱基组成的影响现象已经在核基因组假基因序列和叶绿体基因组的非编码序列和编码序列中发现。通过对动物线粒体基因组编码序列 12SrRNA和Cytb基因的核苷酸替换与其相邻碱基组成关系的调查发现 ,12SrRNA基因序... 核苷酸替换偏好性受其相邻碱基组成的影响现象已经在核基因组假基因序列和叶绿体基因组的非编码序列和编码序列中发现。通过对动物线粒体基因组编码序列 12SrRNA和Cytb基因的核苷酸替换与其相邻碱基组成关系的调查发现 ,12SrRNA基因序列核苷酸替换中转换和颠换之比 (TS/TV)随其相邻碱基A +T含量的增加而减少 。 展开更多
关键词 线粒体编码序列 核苷酸替换 相邻碱基组成 动物
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Association of Bovine Fatty Acid Desaturase 2 Gene Single-Nucleotide Polymorphisms with Intramuscular Fatty Acid Composition in Japanese Black Steers 被引量:1
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作者 Hideaki Takahashi Masayuki Hayashi +8 位作者 Koichi Ushizawa Kagetomo Nishino Yasutoshi Haga Takao Saito Yuki Fujimori Nagako Iwama Hisato Takeda Masanori Komatsu Aduli E. O. Malau-Aduli 《Open Journal of Animal Sciences》 2016年第2期105-115,共11页
Beef from Japanese Black cattle (JBK), is popular in Japan and valued for its highly marbled fat content. In JBK, genes affecting oleic acid content in meat have been studied mainly to lower the fat melting point and ... Beef from Japanese Black cattle (JBK), is popular in Japan and valued for its highly marbled fat content. In JBK, genes affecting oleic acid content in meat have been studied mainly to lower the fat melting point and improve tenderness;however, there has been no direct correlation demonstrated between beef taste and oleic acid. To investigate genes affecting other fatty acids other than oleic acid, polymorphisms of the fatty acid desaturase 2 (FADS2) gene were genotyped and associations with fatty acid profile in JBK beef were investigated. Amplifications of 5’-flanking regions, 12 exons, and 3’-untranslated regions of the FADS2 gene in three Japanese and five Western cattle breeds via PCR, were amplified, sequenced and SNPs were identified using specific TaqMan genotyping assay. Fatty acid composition of intramuscular adipose tissue of the Trapezius muscle was analyzed in JBK steers. Six of the 15 identified SNPs are novel and have never been registered in any public bovine SNP database. A non-synonymous SNP (rs211580559;C > T;294 Ala > Val) in exon 7 was examined in order to evaluate its association with fatty acid profiles. The data showed that highly significant association existed between rs211580559 and C18:2 (n-6) composition, and accounted for 22.3% of the variation. There were no significant relationships between rs2115-80559 and the other fatty acids. It was concluded that rs211580559 of the FADS2 gene may be a useful selection marker for reducing unfavorable volatiles generated from linoleic acid in JBK beef during the cooking process. 展开更多
关键词 Japanese Black Cattle BEEF Fatty Acid Desaturase 2 Single-nucleotide Polymorphism Fatty Acid composition
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番鸭LXRα基因5'-UTR多态对脂肪酸组成的效应分析 被引量:2
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作者 罗华伦 朱海波 +4 位作者 蔡平 罗清云 李万贵 王单单 张依裕 《基因组学与应用生物学》 CAS CSCD 北大核心 2016年第10期2686-2690,共5页
为了探讨LXRα基因5'-UTR多态对番鸭脂肪酸组成的遗传效应,采用PCR-SSCP结合DNA测序的方法筛查白羽番鸭和天柱番鸭LXRα基因5'-UTR多态位点,一般线性模型分析基因型与脂肪酸组成的相关性。结果表明,在番鸭LXRα基因5'-UTR... 为了探讨LXRα基因5'-UTR多态对番鸭脂肪酸组成的遗传效应,采用PCR-SSCP结合DNA测序的方法筛查白羽番鸭和天柱番鸭LXRα基因5'-UTR多态位点,一般线性模型分析基因型与脂肪酸组成的相关性。结果表明,在番鸭LXRα基因5'-UTR检测到1个SNP:53G>A,产生3种基因型:GG、GA和AA,2个等位基因G和A;53G>A位点在2个番鸭群体中均属于中度多态位点,GG和G均为优势等位基因,3种基因型分布均未偏离Hardy-Weinberg平衡(p>0.05);53G>A位点基因型对C12:1、C15:0和C20:2有显著影响,G和A等位基因间的加性效应未达到显著性差异(p>0.05),C15:0在G和A等位基因间显性效应达显著水平(p<0.05)。 展开更多
关键词 番鸭 LXRα基因 SNP 脂肪酸组成
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Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition
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作者 Hao Wu Hongzhu Qu +3 位作者 Ning Wan Zhang Zhang Songnian Hu Jun Yu 《Genomics, Proteomics & Bioinformatics》 CAS CSCD 2012年第4期186-196,共11页
Although strand-biased gene distribution (SGD) was described some two decades ago, the underlying molecular mechanisms and their relationship remain elusive. Its facets include, but are not limited to, the degree of... Although strand-biased gene distribution (SGD) was described some two decades ago, the underlying molecular mechanisms and their relationship remain elusive. Its facets include, but are not limited to, the degree of biases, the strand-preference of genes, and the influence of background nucleotide composition variations. Using a dataset composed of 364 non-redundant bacterial genomes, we sought to illus- trate our current understanding of SGD. First, when we divided the collection of bacterial genomes into non-polC and polC groups according to their possession of DnaE isoforms that correlate closely with taxonomy, the SGD of the polC group stood out more sig- nificantly than that of the non-polC group. Second, when examining horizontal gene transfer, coupled with gene functional conservation (essentiality) and expressivity (level of expression), we realized that they all contributed to SGD. Third, we further demonstrated a weaker G-dominance on the leading strand of the non-polC group but strong purine dominance (both G and A) on the leading strand of the polC group. We propose that strand-biased nucleotide composition plays a decisive role for SGD since the polC-bearing genomes are not only AT-rich but also have pronounced purine-rich leading strands, and we believe that a special mutation spectrum that leads to a strong purine asymmetry and a strong strand-biased nucleotide composition coupled with functional selections for genes and their functions are both at work. 展开更多
关键词 Strand-biased gene distribution Strand-biased nucleotide composition Horizontal gene transfer Purine asymmetry GC content
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LPL基因rs283多态性与运动干预肥胖青少年体成分及糖脂代谢效果的关联性研究 被引量:1
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作者 郜瑞睿 许春艳 +5 位作者 李燕春 张泽亚 陈思韵 黄亚茹 毛小云 胡扬 《中国运动医学杂志》 CAS 北大核心 2015年第6期534-539,共6页
目的:探讨脂蛋白脂酶(LPL)基因rs283多态位点与运动干预肥胖青少年体成分及糖脂代谢效果的关联性。方法:对53名(男27名,女26名)年龄为16.55±2.87岁、BMI为34.02±3.89 kg/m2的汉族肥胖青少年进行为期4周的封闭式中等强度有氧训... 目的:探讨脂蛋白脂酶(LPL)基因rs283多态位点与运动干预肥胖青少年体成分及糖脂代谢效果的关联性。方法:对53名(男27名,女26名)年龄为16.55±2.87岁、BMI为34.02±3.89 kg/m2的汉族肥胖青少年进行为期4周的封闭式中等强度有氧训练,测试训练前后体成分和糖脂代谢指标,用聚合酶链式反应—限制性片断长度多态性(PCR-RFLP)对LPL基因rs283位点进行基因分型,并与减肥效果进行关联性分析。结果:运动引起的指标变化率,GG基因型肥胖青少年Δ体脂百分数为3.37±1.60,显著高于GA基因型肥胖青少年(2.09±1.53,P<0.01);Δlg HOMA-IR为0.52±0.13,显著高于GA基因型肥胖青少年(0.44±0.10,P<0.05);ΔTG为51.91±6.56,显著高于GA基因型肥胖青少年(47.06±5.36,P<0.01)。结论:本研究汉族肥胖青少年中rs283纯合子GG型肥胖青少年对运动减肥更为敏感。该位点基因多态性可能影响肥胖青少年运动减肥的效果。 展开更多
关键词 脂蛋白脂酶 单核苷酸多态性 运动 青少年 体成分 糖代谢 脂代谢
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双生子多巴胺D3受体基因多态性对儿童体成分的影响
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作者 刘晓敏 乌云达来 李玉玲 《人类学学报》 CSSCI CSCD 北大核心 2022年第2期274-281,共8页
均衡的体成分构成对维持机体的健康状态具有重要作用,体成分受遗传与环境因素的共同影响。多巴胺参与摄食、运动及认知等活动的调节,多巴胺D3受体(DRD3)对多巴胺神经通路起关键调节作用,进而对摄食功能发挥作用,从而可能对体成分产生影... 均衡的体成分构成对维持机体的健康状态具有重要作用,体成分受遗传与环境因素的共同影响。多巴胺参与摄食、运动及认知等活动的调节,多巴胺D3受体(DRD3)对多巴胺神经通路起关键调节作用,进而对摄食功能发挥作用,从而可能对体成分产生影响。为了解遗传与环境因素对双生子儿童体成分的影响,并探讨DRD3基因单核苷酸多态性(SNP)与体成分的相关性,对160对4-12岁双生子肱三头肌皮褶厚度(d_(1))、肩胛下皮褶厚度(d_(2))、髂前上棘位皮褶厚度(d_(3))和体质量(m)进行了测量,计算d_(4)(d_(1)+d_(2))、d_(5)(d_(2)/d_(1)),体脂率(P_(f))、瘦体质量(m_(l));从口腔拭子中提取全基因组DNA;通过Amp FISTR Sino filerPlus试剂盒分析确定卵型;采用SNaPshot技术对DRD3基因4个SNP位点进行检测;使用Mx软件估算各指标遗传度;运用广义估计方程模型分析各指标与DRD3基因SNP的相关性。校正年龄效应后,除个别指标(d_(3),m_(l))外,男女生指标遗传度(h)学龄前期总体偏低,且某些指标(d_(2),d_(4),P_(f),m_(l))的遗传度存在一定的性别差异。d_(2)分别与rs324029、rs226082存在相关(P<0.05);d_(3)分别与rs2134655、rs226082存在相关(P<0.05);d_(5)分别与rs2134655、rs167771存在相关(P<0.05);P_(f)分别与rs226082、rs167771存在相关(P<0.05);m_(l)分别与rs2134655、rs226082、rs167771存在相关(P<0.05)。本研究结果表明,遗传和环境因素对儿童体成分发育均有影响,但遗传效应可能存在一定的发育阶段和性别差异;DRD3基因SNPs与儿童的体成分可能存在一定的相关性。 展开更多
关键词 双生子 多巴胺D3受体基因 单核苷酸多态性 遗传度 体成分
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外源性环核苷酸对枯草期同羊肉脂品质的影响 被引量:13
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作者 昝林森 邱怀 +1 位作者 马章全 鲁安太 《西北农业大学学报》 CSCD 1994年第3期74-78,共5页
用标准及自制的环核苷酸组合剂分别处理青年羯同羊各12只,观测其胴体组成、肉质、肝脏、脂肪和血液等性状指标。结果表明,环核苷酸能显著改善同羊的胴体组成,肉质干物质及粗蛋白含量显著增加,脂肪含量显著下降;体脂中对人体必需... 用标准及自制的环核苷酸组合剂分别处理青年羯同羊各12只,观测其胴体组成、肉质、肝脏、脂肪和血液等性状指标。结果表明,环核苷酸能显著改善同羊的胴体组成,肉质干物质及粗蛋白含量显著增加,脂肪含量显著下降;体脂中对人体必需的不饱和脂肪酸含量及尾脂中饱和脂肪酸含量均显著增加,体、尾脂中癸酸含量显著下降。 展开更多
关键词 外源性 环核苷酸 同羊 肉脂品质
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