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Long Non-coding RNAs in the Cytoplasm 被引量:26
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作者 Farooq Rashid Abdullah Shah Ge Shan 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2016年第2期73-80,共8页
An enormous amount of long non-coding RNAs(lnc RNAs) transcribed from eukaryotic genome are important regulators in different aspects of cellular events. Cytoplasm is the residence and the site of action for many ln... An enormous amount of long non-coding RNAs(lnc RNAs) transcribed from eukaryotic genome are important regulators in different aspects of cellular events. Cytoplasm is the residence and the site of action for many lncRNAs. The cytoplasmic lncRNAs play indispensable roles with multiple molecular mechanisms in animal and human cells. In this review, we mainly talk about functions and the underlying mechanisms of lncRNAs in the cytoplasm. We highlight relatively well-studied examples of cytoplasmic lncRNAs for their roles in modulating mRNA stability,regulating m RNA translation, serving as competing endogenous RNAs, functioning as precursors of microRNAs, and mediating protein modifications. We also elaborate the perspectives of cytoplasmic lncRNA studies. 展开更多
关键词 IncRNA mrna stability mrna translation ceRNA MICRORNA
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Mnk kinase pathway: Cellular functions and biological outcomes 被引量:16
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作者 Sonali Joshi Leonidas C Platanias 《World Journal of Biological Chemistry》 CAS 2014年第3期321-333,共13页
The mitogen-activated protein kinase(MAPK) interacting protein kinases 1 and 2(Mnk1 and Mnk2) play important roles in controlling signals involved in mRNA translation. In addition to the MAPKs(p38 or Erk), multiple st... The mitogen-activated protein kinase(MAPK) interacting protein kinases 1 and 2(Mnk1 and Mnk2) play important roles in controlling signals involved in mRNA translation. In addition to the MAPKs(p38 or Erk), multiple studies suggest that the Mnk kinases can be regulated by other known kinases such as Pak2 and/or other unidentified kinases by phosphorylation of residues distinct from the sites phosphorylated by the MAPKs. Several studies have established multiple Mnk protein targets, including PSF, heterogenous nuclear ribonucleoprotein A1, Sprouty 2 and have lead to the identification of distinct biological functions and substrate specificity for the Mnk kinases. In this review we discuss the pathways regulating the Mnk kinases, their known substrates as well as the functional consequences of engagement of pathways controlled by Mnk kinases. These kinases play an important role in mRNA translation via their regulation of eukaryotic initiation factor 4E(eIF4E) and their functions have important implications in tumor biology as well as the regulation of drug resistance to anti-oncogenic therapies. Other studies have identified a role for the Mnk kinases in cap-independent mRNA translation, suggesting that the Mnk kinases can exert important functional effects independently of the phosphorylation of eIF4 E. The role of Mnk kinases in inflammation and inflammationinduced malignancies is also discussed. 展开更多
关键词 Mnk KINASES mrna translation Mitogenactivated protein KINASE SIGNALING EIF4E PHOSPHORYLATION Drug resistance CYTOKINE production CYTOKINE SIGNALING
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植物miRNA作用方式的分子机制研究进展 被引量:14
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作者 张翠桔 莫蓓莘 +1 位作者 陈雪梅 崔洁 《生物技术通报》 CAS CSCD 北大核心 2020年第7期1-14,共14页
miRNA是一类真核生物中广泛存在的约20-24个核苷酸长度的内源单链非编码RNA分子。植物miRNA通过剪切mRNA或抑制翻译负调控基因表达,在细胞增殖分化、个体生长发育和抵御逆境胁迫等生理过程中发挥重要作用。自2002年首次发现植物miRNA以... miRNA是一类真核生物中广泛存在的约20-24个核苷酸长度的内源单链非编码RNA分子。植物miRNA通过剪切mRNA或抑制翻译负调控基因表达,在细胞增殖分化、个体生长发育和抵御逆境胁迫等生理过程中发挥重要作用。自2002年首次发现植物miRNA以来,miRNA迅速成为植物分子生物学领域的研究热点,数十年的研究已经使植物miRNA生物发生、降解、调控植物生长发育等机制及作用得到了清晰的阐述;但是对植物miRNA作用机制的认知仍然处于初级阶段,尤其是miRNA介导翻译抑制的分子机制仍有待挖掘。概述了植物miRNA介导的m RNA剪切和翻译抑制的研究历史和最新进展,探讨了两种机制的影响因素和相互关系,并提出了未来的研究方向和思路,以期为深入了解植物mi RNA的作用机制及促进miRNA的基础研究和实际应用提供理论依据。 展开更多
关键词 MIRNA mrna剪切 翻译抑制 phasiRNA
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Study on the neurotoxic effects of low-level lead exposure in rats 被引量:12
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作者 竺智伟 杨茹莱 +1 位作者 董桂娟 赵正言 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE EI CAS CSCD 2005年第7期686-692,共7页
Objective: To investigate effects of developmental lead exposure on nitric oxide synthase (NOS) activity in different brain regions and on N-methyl-D-aspartate (NMDA) receptor mRNA expression in the hippocampus of rat... Objective: To investigate effects of developmental lead exposure on nitric oxide synthase (NOS) activity in different brain regions and on N-methyl-D-aspartate (NMDA) receptor mRNA expression in the hippocampus of rats. On the basis of these observations, we explored possible mechanisms by which lead exposure leads to impaired learning and memorizing abilities in children. Methods: A series of rat animal models exposed to low levels of lead during the developing period was established (drinking water containing 0.025%, 0.05% and 0.075% lead acetate). NOS activities in the hippocampus, the cerebral cortex, the cerebellum and the brain stem were determined with fluorescence measurement and levels of mRNA expression of the NMDA receptor 2A (NR2A) subunit and NMDA receptor 2B (NR2B) subunit in the rat hippocampus were measured with Retro-translation (RT-PCR). Results: There were no differences in the body weight of rat pups between any of the groups at any given time (P>0.05). The blood lead level of Pb-exposed rat pups showed a systematic pattern of change: at 14 d of age, it was lower than that at 7 d of age, then rising to the peak level at 21 d and finally falling to lower levels at 28 d. The hippocampal NOS activities of lead-exposed groups were all lower than that of the control group on the 21 st and 28th day (P<0.01). NOS activities in the cerebellum of lead-exposed groups were all lower than that of the control group on the 21 st and 28th day (P<0.001) and the NOS activity of the 0.025% group was significantly lower than that of the 0.05% and 0.075% groups on the 28th day (P<0.05).NOS activity in the cerebral cortex of the 0.075% group was significantly lower than that of the control, 0.025% and 0.05% groups on the four day spans (P<0.001). There was no significant difference of NOS activity in the brain stem between any lead-exposed group and the control group on the four day spans. In the 0.05% and the 0.075% groups, the level of NR2A mRNA expression was higher than that in the control group at 7 d and 14 展开更多
关键词 Lead exposure Rat pups Nitric oxide synthase (NOS) Fluorescence HIPPOCAMPUS mrna Retro-translation (RT-PCR) N-methyl-D-aspartate receptor (NMDAR)
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m RNA5′端不同位置的二级结构对原核生物翻译起始的影响 被引量:10
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作者 夏宇蕾 陈农安 陆长德 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2001年第1期29-34,共6页
一个 2 1 bp的序列插入 B50中的人 PCNA- Lac Z′融合蛋白 m RNA的 SD序列的上游 1 1 bpH ind 切点处 ,构成正、反向插入的两个重组质粒 B50 il、B50 i2 .通过计算机程序对 m RNA二级结构的模拟分析 ,B50 il的插入序列在翻译起始区 (TIR... 一个 2 1 bp的序列插入 B50中的人 PCNA- Lac Z′融合蛋白 m RNA的 SD序列的上游 1 1 bpH ind 切点处 ,构成正、反向插入的两个重组质粒 B50 il、B50 i2 .通过计算机程序对 m RNA二级结构的模拟分析 ,B50 il的插入序列在翻译起始区 (TIR)前形成一个发夹结构 ,但不影响 TIR的二级结构 ;B50 i2的插入序列在 TIR 5′端形成一个二级结构 ;而另一克隆 D1 3与 B50因 SD前后的 6个和 7个碱基序列的不同 ;使翻译起始区 TIR的 SD到 AUG附近的二级结构不相同 .实验测定的四者的β-半乳糖苷酶活性与计算机计算的解开 m RNA TIR的二级结构所需能量ΔE进行比较 ,其结果说明 m RNA TIR前面的二级结构对翻译起始无影响 ,而位于 TIR的 5′端的二级结构对翻译起始效率是有影响的 .不过 ,它与 m RNA TIR的 SD到 AUG的附近的二级结构对翻译起始效率的影响相比 ,TIR5′端二级结构的影响比较小 .同时 ,PCNA- Lac Z和 PCNA- Lac Z′两种融合蛋白的β-半乳糖苷酶活性也进行了比较 ,酶活性有差别 ,但不同质粒酶活性的比值仍相同 . 展开更多
关键词 翻译起始 二级结构 翻译起始区 mrna 原核生物
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翻译组学:方法及应用 被引量:8
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作者 赵晶 张弓 《生命的化学》 CAS CSCD 2017年第1期70-79,共10页
所有产生生物学功能的蛋白质都必须由翻译过程来合成,翻译调控是中心法则诸多层次调控中最重要、最显著的调控环节,其对蛋白质组的调控幅度超过其他所有调控层次的总和。因此对翻译进行总体的研究非常必要,涉及生命科学的方方面面。翻... 所有产生生物学功能的蛋白质都必须由翻译过程来合成,翻译调控是中心法则诸多层次调控中最重要、最显著的调控环节,其对蛋白质组的调控幅度超过其他所有调控层次的总和。因此对翻译进行总体的研究非常必要,涉及生命科学的方方面面。翻译组学是总体上研究细胞内翻译状况的新兴学科,已在蛋白质组、肿瘤研究、微生物抗逆研究等方面做出了全新的贡献,极大地拓展了人们在翻译调控和蛋白质合成方面的视野。本文综述了近年来研究翻译组的主要方法,及其在基础研究与工程应用方面的巨大潜力。 展开更多
关键词 翻译组 RNC-mrna 蛋白质组 翻译调控
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中国科学家在乙烯信号转导领域取得突破性进展 被引量:7
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作者 施怡婷 杨淑华 《植物学报》 CAS CSCD 北大核心 2016年第3期287-289,共3页
乙烯是一种气态植物激素,在植物生长发育的各个阶段发挥着非常重要的作用。最近,中国科学家在乙烯信号转导的分子机制研究中取得了突破性进展。
关键词 乙烯 EIN2 EBF1/2 mrna翻译 P-BODY
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Structure and functions of the translation initiation factor eIF4E and its role in cancer development and treatment 被引量:5
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作者 Arianna Pisera Adele Campo Salvatore Campo 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2018年第1期13-24,共12页
In eukaryotic cells, protein synthesis is a complex and multi-step process that has several mechanisms to start the translation including cap-dependent and cap-independent initiation. The translation control of eukary... In eukaryotic cells, protein synthesis is a complex and multi-step process that has several mechanisms to start the translation including cap-dependent and cap-independent initiation. The translation control of eukaryotic gene expression occurs principally at the initiation step. In this context, it is critical that the eukaryotic translation initiation factor eIF4E bind to the 7-methylguanosine (m7G) cap present at the 5'- UTRs of most eukaryotic mRNAs. Combined with other initiation factors, elF4E mediates the mRNA recruitment on ribosomes to start the translation. Moreover, the eIF4E nuclear bodies are involved in the export of specific mRNAs from the nucleus to the cytoplasm. In this review, we focus on the elF4E structure and its physiological functions, and describe the role of eIF4E in cancer development and progression and the current therapeutic strategies to target eIF4E. 展开更多
关键词 elF4E factor translation initiation mrna exportCancer
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Phosphorylated S6K1 and 4E-BP1 play different roles in constitutively active Rheb-mediated retinal ganglion cell survival and axon regeneration after optic nerve injury
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作者 Jikuan Jiang Lusi Zhang +5 位作者 Jingling Zou Jingyuan Liu Jia Yang Qian Jiang Peiyun Duan Bing Jiang 《Neural Regeneration Research》 SCIE CAS CSCD 2023年第11期2526-2534,共9页
Ras homolog enriched in brain(Rheb) is a small GTPase that activates mammalian target of rapamycin complex 1(mTORC1).Previous studies have shown that constitutively active Rheb can enhance the regeneration of sensory ... Ras homolog enriched in brain(Rheb) is a small GTPase that activates mammalian target of rapamycin complex 1(mTORC1).Previous studies have shown that constitutively active Rheb can enhance the regeneration of sensory axons after spinal cord injury by activating downstream effectors of mTOR.S6K1 and4E-BP1 are important downstream effectors of mTORC1.In this study,we investigated the role of Rheb/mTOR and its downstream effectors S6K1 and 4E-BP1in the protection of retinal ganglion cells.We transfected an optic nerve crush mouse model with adeno-associated viral 2-mediated constitutively active Rheb and observed the effects on retinal ganglion cell survival and axon regeneration.We found that overexpression of constitutively active Rheb promoted survival of retinal ganglion cells in the acute(14 days) and chronic(21 and 42 days) stages of injury.We also found that either co-expression of the dominant-negative S6K1mutant or the constitutively active 4E-BP1 mutant together with constitutively active Rheb markedly inhibited axon regeneration of retinal ganglion cells.This suggests that mTORC1-mediated S6K1 activation and 4E-BP1 inhibition were necessary components for constitutively active Rheb-induced axon regeneration.However,only S6K1 activation,but not 4E-BP1 knockdown,induced axon regeneration when applied alone.Furthermore,S6K1 activation promoted the survival of retinal ganglion cells at 14 days post-injury,whereas 4E-BP1 knockdown unexpectedly slightly decreased the survival of retinal ganglion cells at 14 days postinjury.Ove rexpression of constitutively active 4E-BP1 increased the survival of retinal ganglion cells at 14 days post-injury.Likewise,co-expressing constitutively active Rheb and constitutively active 4E-BP1 markedly increased the survival of retinal ganglion cells compared with overexpression of constitutively active Rheb alone at 14 days post-injury.These findings indicate that functional 4E-BP1 and S6K1 are neuroprotective and that 4E-BP1 may exert protective effects through a pathway at least 展开更多
关键词 axon regeneration central nervous system gene therapy mrna translation NEURODEGENERATION NEUROPROTECTION optic nerve crush Ras homolog enriched in the brain retina translation initiation
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脱腺苷酸酶与RNA代谢调控
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作者 廖小燕 闫永彬 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2023年第5期1002-1016,共15页
真核细胞中,RNA 3’端poly(A)或oligo(A)的特异性水解被称为脱腺苷酸化(deadenylation)。脱腺苷酸化的执行者被称为脱腺苷酸酶(deadenylase)。绝大多数真核细胞中都存在多种脱腺苷酸酶,其中CCR4-NOT复合体和PAN2-PAN3复合体负责细胞中... 真核细胞中,RNA 3’端poly(A)或oligo(A)的特异性水解被称为脱腺苷酸化(deadenylation)。脱腺苷酸化的执行者被称为脱腺苷酸酶(deadenylase)。绝大多数真核细胞中都存在多种脱腺苷酸酶,其中CCR4-NOT复合体和PAN2-PAN3复合体负责细胞中大多数mRNA的非特异性降解,PARN和PNLDC1等参与了特定子集mRNA的降解和多种非编码RNA的生物合成。作为RNA水平的重要调控者之一,脱腺苷酸酶参与了几乎所有细胞生命活动和多种重要生理和病理过程。在真核细胞中,脱腺苷酸酶的分子调控机制可能是:细胞中的大量RNA结合蛋白是RNA命运调控的中心分子,一方面根据RNA的状态或细胞需求识别特定的靶标RNA子集,另一方面招募特定脱腺苷酸酶,对特定子集RNA的3’端进行降解或修剪,从而调控RNA的最终命运。细胞中十余种脱腺苷酸酶同工酶、上千种RNA结合蛋白以及多种多样的翻译后修饰构成了复杂的动态分子调控网络,帮助细胞在生长、增殖、分化、应激、死亡等重要生命活动中精确维持RNA稳态或快速转换基因表达谱。 展开更多
关键词 脱腺苷酸酶 酶分子调控 mrna降解 翻译效率 RNA代谢 RNA结合蛋白
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A systematic survey of PRMT interactomes reveals the key roles of arginine methylation in the global control of RNA splicing and translation 被引量:4
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作者 Huan-Huan Wei Xiao-Juan Fan +9 位作者 Yue Hu Xiao-Xu Tian Meng Guo Miao-Wei Mao Zhao-Yuan Fang Ping Wu Shuai-Xin Gao Chao Peng Yun Yang Zefeng Wang 《Science Bulletin》 SCIE EI CSCD 2021年第13期1342-1357,M0004,共17页
Thousands of proteins undergo arginine methylation,a widespread post-translational modification catalyzed by several protein arginine methyltransferases(PRMTs).However,global understanding of their biological function... Thousands of proteins undergo arginine methylation,a widespread post-translational modification catalyzed by several protein arginine methyltransferases(PRMTs).However,global understanding of their biological functions is limited due to the lack of a complete picture of the catalytic network for each PRMT.Here,we systematically identified interacting proteins for all human PRMTs and demonstrated their functional importance in mRNA splicing and translation.We demonstrated significant overlapping of interactomes of human PRMTs with the known methylarginine-containing proteins.Different PRMTs are functionally redundant with a high degree of overlap in their substrates and high similarities between their putative methylation motifs.Importantly,RNA-binding proteins involved in regulating RNA splicing and translation contain highly enriched arginine methylation regions.Moreover,inhibition of PRMTs globally alternates alternative splicing(AS)and suppresses translation.In particular,ribosomal proteins are extensively modified with methylarginine,and mutations in their methylation sites suppress ribosome assembly,translation,and eventually cell growth.Collectively,our study provides a global view of different PRMT networks and uncovers critical functions of arginine methylation in regulating mRNA splicing and translation. 展开更多
关键词 Post-translational modification Protein arginine methyltransferase RNA-binding protein Ribosomal proteins Alternative splicing mrna translation
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内部核糖体进入位点及其研究进展 被引量:3
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作者 安怀杰 俞炜源 孙志伟 《生物技术通讯》 CAS 2007年第4期663-666,共4页
内部核糖体进入位点(IRES)是mRNA5'端非编码区的一段特殊序列,允许核糖体直接在此序列结合mRNA并起始翻译。对IRES的发现、分类、特征,以及细胞中是否存在该元件进行了简要综述。
关键词 内部核糖体进入位点 双顺反子 非编码区 翻译
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Higher Concentrations of Glucose or Insulin Increase the Risk of Various Types of Cancer in Obesity or Type 2 Diabetes by Decreasing the Expression of p27Kip1, a Cell Cycle Repressor Protein 被引量:1
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作者 Isao Eto 《American Journal of Molecular Biology》 2020年第1期1-11,共11页
Research Aims: Obesity and type 2 diabetes are known to be associated with increased risk of various types of cancer. However, the molecular biological mechanism of how the risk of cancer is increased in obesity or ty... Research Aims: Obesity and type 2 diabetes are known to be associated with increased risk of various types of cancer. However, the molecular biological mechanism of how the risk of cancer is increased in obesity or type 2 diabetes is not known. The aim this research is to investigate if the decreased expression of p27Kip1, a cell cycle repressor protein, plays a central role in this mechanism. Research Methods, Previous Studies and Theoretical Backgrounds: It is well known that the expression of p27Kip1 is increased by numerous nutritional or chemopreventive anti-cancer agents. But it has never been known that the expression of p27Kip1 could be decreased, rather than increased, and the risk of cancer could be increased, rather than decreased. This problem was solved recently and this new analytical method was used in this study. Results: 1) The expression of p27Kip1 was indeed significantly decreased in human obese type 2 diabetic individuals relative to the lean normal controls. 2) The expression of p27Kip1 was also significantly decreased in genetically obese rodents relative to the lean normal controls. Additionally, in obese rodents, the concentrations of glucose or insulin were significantly increased relative to the lean normal controls. 3) Using human cells cultured in vitro it was found that the increased concentrations of glucose or insulin decrease the expression of p27Kip1. Conclusions: These results suggest that higher concentrations of glucose or insulin increase the risk of various types of cancer in obesity or type 2 diabetes by decreasing the expression of p27Kip1. 展开更多
关键词 OBESITY Type 2 Diabetes CANCER P27KIP1 mrna translation Initiation 5’-Untranslated Region (5’UTR) 5’-End Cap of P27KIP1 mrna Upstream Open Reading Frame (uORF) Internal RIBOSOME Entry Site (IRES)
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mRNA5’端发卡结构与翻译的起始调控 被引量:2
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作者 王传铭 尚喜雨 《生物信息学》 2008年第3期135-137,141,共4页
mRNA的5’端大多存在各种由RNA自身折叠形成的发卡结构,这些结构对于核糖体识别mRNA翻译起始位点并与之准确结合往往具有十分重要的意义。简要综述了此类结构的基本特征以及它们在生物体内所起到的调控蛋白质翻译的作用。
关键词 mrna 发夹结构 翻译起始 调控
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遗传信息的转录和翻译机制是怎样发现的 被引量:3
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作者 向义和 《自然杂志》 北大核心 2005年第6期339-345,共7页
文章具体地介绍了遗传信息表达机制的发现过程:克里克关于序列假设、中心法则、模板RNA和连接物RNA的提出及其实验背景;信使RNA概念的形成及其转录机制的发现;转移RNA的功能及其结构的发现;在核糖体上蛋白质合成机制的确立。
关键词 序列假设 中心法则 信使RNA 转移RNA转录 翻译 核糖体 蛋白质合成
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阿维霉素干预MTIF2调控核糖体翻译进程抑制乙型肝炎病毒复制的机制研究
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作者 常凯 那琬琳 +5 位作者 刘晨霞 江忠勇 王艳艳 许宏宣 沈金兰 刘媛 《安徽医科大学学报》 CAS 北大核心 2022年第2期203-207,共5页
目的探讨核糖体翻译因子抑制剂阿维霉素对乙型肝炎病毒复制的抑制作用及分子机制。方法使用不同浓度的阿维霉素处理肝癌细胞Hep3B,应用CCK-8检测细胞活性,流式细胞法检测细胞凋亡,qPCR方法检测病毒HBV-DNA、pgRNA、宿主MTIF2和RPL10基... 目的探讨核糖体翻译因子抑制剂阿维霉素对乙型肝炎病毒复制的抑制作用及分子机制。方法使用不同浓度的阿维霉素处理肝癌细胞Hep3B,应用CCK-8检测细胞活性,流式细胞法检测细胞凋亡,qPCR方法检测病毒HBV-DNA、pgRNA、宿主MTIF2和RPL10基因表达量,ELISA免疫测法检测HBsAg和HBeAg,化学发光检测法对AFP进行定量检测,生物化学方法检测细胞外泌谷草转氨酶(AST)、谷丙转氨酶(ALT)和碱性磷酸酶(ALP)蛋白。结果阿维霉素对Hep3B细胞增殖没有抑制作用,对细胞的凋亡也没有影响。但能促进细胞AST分泌,降低AFP外泌水平,对ALP分泌影响较小。在Hep3B细胞中,阿维霉素能通过干预MTIF2促使pgRNA表达量积累,反馈上调宿主RPL10和MTIF2基因mRNA表达。并能有效降低HBsAg、HBeAg和HBV-DNA水平。结论阿维霉素能够抑制MTIF2翻译起始,通过影响翻译起始调控病毒组装蛋白的翻译进程,进而抑制乙肝病毒复制。 展开更多
关键词 阿维霉素 乙型肝炎病毒 mrna翻译 翻译起始因子 调控机制
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Domain Structure of the Selenocysteine-specific Translation Factor SelB in Prokaryotes
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作者 AUGUST B■CK ROLF HILGENFELD +2 位作者 PETER TORMAY REINHARD WILTING, AND MATTHIAS KROMAYER (Lehrstuhl fur Mikrobiologie der Universitat uüunchen, MiriaWard-Strasse 1a, D-80638 Munchen, Germany Institut fur olekulare Biotechnologie, Beutenbergtrasse 11,D-0770 《Biomedical and Environmental Sciences》 SCIE CAS CSCD 1997年第2期125-128,共4页
Translation factor SelB is the key component for the specific decoding of UGA codons with selenocysteine at the ribosome. SelB binds selenocysteyl-tRNASec, guanine nucleotides and a secondary structure of the selenopr... Translation factor SelB is the key component for the specific decoding of UGA codons with selenocysteine at the ribosome. SelB binds selenocysteyl-tRNASec, guanine nucleotides and a secondary structure of the selenoprotein mRNA following the UGA at the 3' side. A comparison of the amino acid sequences of SelB species from E. coli,Desulfomicrobium baculatum, Clostridium thermoaceticum and Haemophilus influenzae showed that the proteins consist of at least four structural domains from which the Nterminal three are well conserved and share homology with elongation factor Tu whereas the C-terminal one is more variable and displays no similarity to any protein known. With the aid of the coordinates of EF-Tu the N-terminal part has been modelled into a 3D structure which exhibits intriguing features concerning its interaction with guanine nucleotides and other components of the translational apparatus. Cloning and expression of fragments of SelB and biochemical analysis of the purified truncated proteins showed that the C-terminal 19 kDa protein fragment is able to specifically bind to the selenoprotein mRNA. SelB, thus, is a translation factor functionally homologous to EF-Tu hooked up to the mRNA with its C-terminal end. The formation by SelB of a quaternary complex in vivo has been proven by overexpression of truncated genes of SelB and by demonstration that fragments comprising the mRNA or the tRNA binding domain inhibit selenocysteine insertion 展开更多
关键词 mrna EF Ts TRNA Domain Structure of the Selenocysteine-specific translation Factor SelB in Prokaryotes NATURE
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eIF-Three to Tango: emerging functions of translation initiation factor eIF3 in protein synthesis and disease 被引量:1
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作者 Dieter AWolf Yingying Lin +1 位作者 Haoran Duan Yabin Cheng 《Journal of Molecular Cell Biology》 SCIE CAS CSCD 2020年第6期403-409,共7页
Studies over the past three years have substantially expanded the involvements of eukaryotic initiation factor 3 (eIF3) in messenger RNA (mRNA) translation. It now appears that this multi-subunit complex is involved i... Studies over the past three years have substantially expanded the involvements of eukaryotic initiation factor 3 (eIF3) in messenger RNA (mRNA) translation. It now appears that this multi-subunit complex is involved in every possible form of mRNA translation, controlling every step of protein synthesis from initiation to elongation, termination, and quality control in positive as well as negative fashion. Through the study of eIF3, we are beginning to appreciate protein synthesis as a highly integrated process coordinating protein production with protein folding, subcellular targeting, and degradation. At the same time, eIF3 subunits appear to have specific functions that probably vary between different tissues and individual cells. Considering the broad functions of eIF3 in protein homeostasis, it comes as little surprise that eIF3 is increasingly implicated in major human diseases and first attempts at therapeutically targeting eIF3 have been undertaken. Much remains to be learned, however, about subunit- and tissue-specific functions of eIF3 in protein synthesis and disease and their regulation by environmental conditions and post-translational modifications. 展开更多
关键词 mrna translation translation initiation factor eIF3 protein homeostasis CANCER
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大肠杆菌RNA分子伴侣Hfq与DsrA和rpoS作用机制的研究进展 被引量:1
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作者 王丽君 王维维 +2 位作者 龚庆国 吴季辉 施蕴渝 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2013年第7期627-633,共7页
RNA分子伴侣Hfq是细菌重要的转录后调节因子,它能够帮助非编码small RNA(sRNA)与目标mRNA配对.mRNArpoS编码的稳态sigma因子σS是大肠杆菌中应激响应的核心调控因子.在低温下,Hfq蛋白对于sRNA DsrA介导的mRNArpoS的翻译激活是必需的.然... RNA分子伴侣Hfq是细菌重要的转录后调节因子,它能够帮助非编码small RNA(sRNA)与目标mRNA配对.mRNArpoS编码的稳态sigma因子σS是大肠杆菌中应激响应的核心调控因子.在低温下,Hfq蛋白对于sRNA DsrA介导的mRNArpoS的翻译激活是必需的.然而,Hfq使用何种机制来促进sRNA和mRNA配对一直有两种并不互斥的模型存在:Hfq远侧和近侧两个表面同时结合sRNA和mRNA,使得两条RNA相互靠近,便于形成碱基配对;Hfq可能结合一条或者两条RNA,改变它们的二级结构或者三级结构,从而促进sRNA-mRNA配对的实现.最近的研究报道,成功在体外捕捉到了sRNA-Hfq-mRNA三元复合物,测定了AU6A-Hfq-A7三元复合物的晶体结构,并且在大肠杆菌体内证实了三元复合物的形成对于Hfq帮助sRNA DsrA激活mRNA rpoS的翻译是重要的.本文以sRNA DsrA和mRNA rpoS为例综述了蛋白质Hfq与RNA的结合特性,同时也讨论了sRNA-Hfq-mRNA三元复合物的存在对于研究sRNA介导的调控机制的一些启示. 展开更多
关键词 HFQ RNA分子伴侣 SRNA DSRA mrna RPOS Hfq-RNA复合物晶体结构 翻译激活
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Regulation of nonsense-mediated mRNA decay in neural development and disease 被引量:1
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作者 Paul Jongseo Lee Suzhou Yang +1 位作者 Yu Sun Junjie U.Guo 《Journal of Molecular Cell Biology》 SCIE CAS CSCD 2021年第4期269-281,共13页
Eukaryotes have evolved a variety of mRNA surveillance mechanisms to detect and degrade aberrant mRNAs with potential deleterious outcomes.Among them,nonsense-mediated mRNA decay(NMD)functions not only as a quality co... Eukaryotes have evolved a variety of mRNA surveillance mechanisms to detect and degrade aberrant mRNAs with potential deleterious outcomes.Among them,nonsense-mediated mRNA decay(NMD)functions not only as a quality control mechanism targeting aberrant mRNAs containing a premature termination codon but also as a posttranscriptional gene regulation mechanism tar-geting numerous physiological mRNAs.Despite its well-characterized molecular basis,the regulatory scope and biological functions of NMD at an organismal level are incompletely understood.In humans,mutations in genes encoding core NMD factors cause specific developmental and neurological syndromes,suggesting a critical role of NMD in the central nervous system.Here,we review the accumulating biochemical and genetic evidence on the developmental regulation and physiological functions of NMD as well as an emerging role of NMD dysregulation in neurodegenerative diseases. 展开更多
关键词 RNA metabolism nonsense-mediated mrna decay NEURODEGENERATION NEURODEVELOPMENT amyotrophic lateral sclerosis frontal temporal dementia mrna translation
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