Dendrocalamus latiflorus Munro is a woody clumping bamboo with rapid shoot growth.Both genetic transformation and clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated protein 9(Cas9)gene...Dendrocalamus latiflorus Munro is a woody clumping bamboo with rapid shoot growth.Both genetic transformation and clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated protein 9(Cas9)gene editing techniques are available for D.latiflorus,enabling reverse genetic approaches.Thus,D.latiflorus has the potential to be a model bamboo species.However,the genome sequence of D.latiflorus has remained unreported due to its polyploidy and large genome size.Here,we sequenced the D.latiflorus genome and assembled it into three allele-aware subgenomes(AABBCC),representingthe largest genome of a major bamboo species.We assembled 70 allelic chromosomes(2,737 Mb)for hexaploid D.latiflorus using both singlemolecule sequencing from the Pacific Biosciences(Pac Bio)Sequel platform and chromosome conformation capture sequencing(Hi-C).Repetitive sequences comprised 52.65%of the D.latiflorus genome.We annotated 135231 protein-coding genes in the genome based on transcriptomes from eight different tissues.Transcriptome sequencing using RNA-Seq and Pac Bio singlemolecule real-time long-read isoform sequencing revealed highly differential alternative splicing(AS)between non-abortive and abortive shoots,suggesting that AS regulates the abortion rate of bamboo shoots.This high-quality hexaploid genome and comprehensive strand-specific transcriptome datasets for this Poaceae family member will pave the way for bamboo research using D.latiflorus as a model species.展开更多
To achieve germplasm innovation and study genetic variation of important traits of bamboo plants,we used Bambusa multiplex,B.chungii,and Dendrocalamus latiflorus as parent materials for distant and inbred hybridizatio...To achieve germplasm innovation and study genetic variation of important traits of bamboo plants,we used Bambusa multiplex,B.chungii,and Dendrocalamus latiflorus as parent materials for distant and inbred hybridizations.Two hybrid populations and three inbred populations were obtained:two populations consisted of 57 hybrid progenies from B.multiplex 9 B.chungii,26 hybrid progenies from B.multiplex 9 D.latiflorus,and three inbred progenies were from B.multiplex,B.chungii,and D.latiflorus.Traits for growth,morphology,and fiber were examined from the five populations when plants were 3 years old.Two hybrid populations had significant growth advantages in terms of height,diameter at ground level and internodal length.In terms of variability in morphological traits,the two hybrid populations followed the same trend,namely,seven morphological traits showed phenotypes that were intermediate to those of their parents;three morphological traits showed strong maternal effects,and three other morphological traits showed strong paternal effects.Among the five populations,the two hybrid populations had high arithmetic average fiber length,lengthweighted average fiber length and mass-weighted average fiber length,moreover,extensive variations of these three traits were observed within these two hybrid populations.The establishment of distant hybrid populations from these three bamboo species increased the genetic diversity more than in the other species examined.This work provides excellent materials for breeding new varieties and lays the foundation for understanding the genetics of important traits by analyzing related functional genes.展开更多
The potential medicinal value of Ma bamboo(Dendrocalamus latiflorus), one of the most popular and economically important bamboo species in China, has been underestimated. In the present study, we found that D. latiflo...The potential medicinal value of Ma bamboo(Dendrocalamus latiflorus), one of the most popular and economically important bamboo species in China, has been underestimated. In the present study, we found that D. latiflorus leaf extract(DLE) reduced fasting blood glucose levels, body weight,and low-density lipoprotein cholesterol with low liver toxicity in db/db mice. In addition, gene expression profiling was performed and pathway enrichment analysis showed that DLE affected metabolic pathways.Importantly, DLE activated the AKT signaling pathway and reduced glucose production by downregulating glucose-6-phosphatase(G6 PC) and phosphoenolpyruvate carboxykinase 1(PCK1) expression. Moreover, network pharmacology analysis identified rutin as an active component in DLE through targeting insulin growth factor 1 receptor(IGF1 R), an upstream signaling transducer of AKT. Due to its hypoglycemic effects and low toxicity, DLE may be considered an adjuvant treatment option for type 2 diabetes patients.展开更多
基金supported by the National Key Research and Development Program of China(2018YFD0600104)the National Natural Science Foundation of China Grant(31971734)+3 种基金the Natural Science Foundation of Fujian Province(Grant No.2021J02027)the Distinguished Young Scholar Program of Fujian Agriculture and Forestry University(Grant No.xjq202017)the Technological Innovation Team at the University of Fujian provincethe Forestry Peak Discipline Construction Project from Fujian Agriculture and Forestry University。
文摘Dendrocalamus latiflorus Munro is a woody clumping bamboo with rapid shoot growth.Both genetic transformation and clustered regularly interspaced short palindromic repeats(CRISPR)/CRISPR-associated protein 9(Cas9)gene editing techniques are available for D.latiflorus,enabling reverse genetic approaches.Thus,D.latiflorus has the potential to be a model bamboo species.However,the genome sequence of D.latiflorus has remained unreported due to its polyploidy and large genome size.Here,we sequenced the D.latiflorus genome and assembled it into three allele-aware subgenomes(AABBCC),representingthe largest genome of a major bamboo species.We assembled 70 allelic chromosomes(2,737 Mb)for hexaploid D.latiflorus using both singlemolecule sequencing from the Pacific Biosciences(Pac Bio)Sequel platform and chromosome conformation capture sequencing(Hi-C).Repetitive sequences comprised 52.65%of the D.latiflorus genome.We annotated 135231 protein-coding genes in the genome based on transcriptomes from eight different tissues.Transcriptome sequencing using RNA-Seq and Pac Bio singlemolecule real-time long-read isoform sequencing revealed highly differential alternative splicing(AS)between non-abortive and abortive shoots,suggesting that AS regulates the abortion rate of bamboo shoots.This high-quality hexaploid genome and comprehensive strand-specific transcriptome datasets for this Poaceae family member will pave the way for bamboo research using D.latiflorus as a model species.
基金funded by Natural Science Foundation of China(31500551)the Fundamental Research Funds for the Central Non-profit Research Institute of Chinese Academy of Forestry(CAFYBB2016QB008)+1 种基金Zhejiang Science and Technology Major Program on Agricultural New Variety Breeding(2016C02056-8)the Fundamental Research Funds for the Central Non-profit Research Institute of Research Institute of Subtropical Forestry-Chinese Academy of Forestry(RISF2014001)
文摘To achieve germplasm innovation and study genetic variation of important traits of bamboo plants,we used Bambusa multiplex,B.chungii,and Dendrocalamus latiflorus as parent materials for distant and inbred hybridizations.Two hybrid populations and three inbred populations were obtained:two populations consisted of 57 hybrid progenies from B.multiplex 9 B.chungii,26 hybrid progenies from B.multiplex 9 D.latiflorus,and three inbred progenies were from B.multiplex,B.chungii,and D.latiflorus.Traits for growth,morphology,and fiber were examined from the five populations when plants were 3 years old.Two hybrid populations had significant growth advantages in terms of height,diameter at ground level and internodal length.In terms of variability in morphological traits,the two hybrid populations followed the same trend,namely,seven morphological traits showed phenotypes that were intermediate to those of their parents;three morphological traits showed strong maternal effects,and three other morphological traits showed strong paternal effects.Among the five populations,the two hybrid populations had high arithmetic average fiber length,lengthweighted average fiber length and mass-weighted average fiber length,moreover,extensive variations of these three traits were observed within these two hybrid populations.The establishment of distant hybrid populations from these three bamboo species increased the genetic diversity more than in the other species examined.This work provides excellent materials for breeding new varieties and lays the foundation for understanding the genetics of important traits by analyzing related functional genes.
基金supported by Beijing Talents Foundation (No.2017000021223ZK30,China)Consulting Research Project of the Chinese Academy of Engineering (No.2020-XZ-23,China)Beijing Lab Foundation (China)。
文摘The potential medicinal value of Ma bamboo(Dendrocalamus latiflorus), one of the most popular and economically important bamboo species in China, has been underestimated. In the present study, we found that D. latiflorus leaf extract(DLE) reduced fasting blood glucose levels, body weight,and low-density lipoprotein cholesterol with low liver toxicity in db/db mice. In addition, gene expression profiling was performed and pathway enrichment analysis showed that DLE affected metabolic pathways.Importantly, DLE activated the AKT signaling pathway and reduced glucose production by downregulating glucose-6-phosphatase(G6 PC) and phosphoenolpyruvate carboxykinase 1(PCK1) expression. Moreover, network pharmacology analysis identified rutin as an active component in DLE through targeting insulin growth factor 1 receptor(IGF1 R), an upstream signaling transducer of AKT. Due to its hypoglycemic effects and low toxicity, DLE may be considered an adjuvant treatment option for type 2 diabetes patients.
