Progress in plant breeding depends on the development of genetic resources,genetic knowledge,and breeding techniques.The core of plant breeding is the use of naturally occurring variation.At the beginning of the post-...Progress in plant breeding depends on the development of genetic resources,genetic knowledge,and breeding techniques.The core of plant breeding is the use of naturally occurring variation.At the beginning of the post-genomic era,a new concept of"breeding by design"was proposed,which aims to control all allelic variation for all genes of agronomic importance.In the past two decades,we have applied a three-step strategy for research on rice breeding by design.In the first step,we constructed a singlesegment substitution line(SSSL)library using Huajingxian 74(HJX74),an elite xian(indica)rice cultivar,as the recipient in which to assemble genes from the rice AA genome.In the second step,we identified a series of desirable genes in the SSSL library.In the third step,we designed new rice lines,and achieved the breeding goals by pyramiding target genes in the HJX74-SSSL library.This review introduces the background,concept,and strategy of breeding by design,as well as our achievements in rice breeding by design using the HJX74-SSSL platform.Our practice shows that target chromosome-segment substitution is a way to breeding by design.展开更多
[Objective]The aim was to research the relationship between nucleotide substitutions rate and selective pressure.[Method]Synonymous and nonsynonymous substitutions and their ratios for some sorghum and maize genes in ...[Objective]The aim was to research the relationship between nucleotide substitutions rate and selective pressure.[Method]Synonymous and nonsynonymous substitutions and their ratios for some sorghum and maize genes in nucleus and organelle genomes were analyzed by statistical method,and comparative analysis of related functional genes were carried out.[Result]The pure selective pressures of the related functional genes were similar between nucleus and chloroplast genomes,but was lower in mitochondrial genome.The significant differences of nucleotide substitution rate between sorghum and maize orthologous genes in nucleus genome,and among different functional genes in nucleus genome were mainly due to the nonsynonymous substitution difference.[Conclusion]The molecular evolutional rate of different functional genes and different lineages were influenced by selective pressure.The differences of molecular evolutional rate among nucleus,chloroplast and mitochondria genomes had no direct relationship with selective pressure.展开更多
Researches on the relationship between photosynthesis and wheat yield have equally attracted the attention of both domestic and overseas scholars. No report has existed so far on the study of the effects of exogenous ...Researches on the relationship between photosynthesis and wheat yield have equally attracted the attention of both domestic and overseas scholars. No report has existed so far on the study of the effects of exogenous chromosomes on photosynthesis using the substitution series as materials. In this research, Triticum aestivum cv. Chinese Spring-Lophopyrum elongatum （Host） A.Loeve disomic substitution series were used as materials and flag leaves as the measuring position. And the CI-310 Portable Photosynthesis System made by CID Co. in USA was used to measure the net rate of photosynthesis of flag leaves in different developing stages and also to correlate photosynthesis with yield. Results showed that, out of the whole developing stages, at the anthesis stage the line of DS2Ee （2A） had the highest photosynthetic rate, therefore it could be used in improving process of the character of kernel number. The flag leaves of DS4Ee （4A, 4B, 4D） lines demonstrated certain high net photosynthetic rate from heading to grain filling stage, so it is valuable in the researh of promoting the yield index like 1 000-grain weight through improvement of the photosynthetic rate at grain filling stage.展开更多
The study of nucleotide substitution is very important both to our understanding of gene evolution and to reliable estimation of phylogenetic relationships. In this paper nucleotide substitution is assumed to be ran...The study of nucleotide substitution is very important both to our understanding of gene evolution and to reliable estimation of phylogenetic relationships. In this paper nucleotide substitution is assumed to be random and the Markov model is applied to the study of the evolution of genes. Then a non linear optimization approach is proposed for estimating substitution in real sequences. This substitution is called the 'Nucleotide State Transfer Matrix'. One of the most important conclusions from this work is that gene sequence evolution conforms to the Markov process. Also, some theoretical evidences for random evolution are given from energy analysis of DNA replication.展开更多
A set of T. aestivum-L. elongatum substitution lines were studied on yellow rust resistance at seedling stage, inheritance of the resistance and esterase-5 (Est-5) analysis. The results demonstrated that L. elongatum ...A set of T. aestivum-L. elongatum substitution lines were studied on yellow rust resistance at seedling stage, inheritance of the resistance and esterase-5 (Est-5) analysis. The results demonstrated that L. elongatum carried a new yellow rust resistance gene(s), which was dominant and located on chromosome 3E of L. elongatum. The biochemical locus encoding Est-5 was also located on chromosome 3E, and was tentatively named Est-E5, which was co-segregant with the Yr gene(s) in wheat background. In addition, the transmission frequencies of chromosome 3E in 3A/3E and 3D/3E hybrids selfing were significantly higher than that of chromosome 3E in 3B/3E hybrid, which was probably due to the difference on genetic relationships among A, B, D and E genomes.展开更多
BACKGROUND Since it is currently not possible to eradicate hepatitis B virus(HBV)infection with existing treatments,research continues to uncover new therapeutic strategies.HBV core protein,encoded by the HBV core gen...BACKGROUND Since it is currently not possible to eradicate hepatitis B virus(HBV)infection with existing treatments,research continues to uncover new therapeutic strategies.HBV core protein,encoded by the HBV core gene(HBC),intervenes in both structural and functional processes,and is a key protein in the HBV life cycle.For this reason,both the protein and the gene could be valuable targets for new therapeutic and diagnostic strategies.Moreover,alterations in the protein sequence could serve as potential markers of disease progression.AIM To detect,by next-generation sequencing,HBC hyper-conserved regions that could potentially be prognostic factors and targets for new therapies.METHODS Thirty-eight of 45 patients with chronic HBV initially selected were included and grouped according to liver disease stage[chronic hepatitis B infection without liver damage(CHB,n=16),liver cirrhosis(LC,n=5),and hepatocellular carcinoma(HCC,n=17)].HBV DNA was extracted from patients’plasma.A region between nucleotide(nt)1863 and 2483,which includes HBC,was amplified and analyzed by next-generation sequencing(Illumina Mi Seq platform).Sequences were genotyped by distance-based discriminant analysis.General and intergroup nt and amino acid(aa)conservation was determined by sliding window analysis.The presence of nt insertion and deletions and/or aa substitutions in the different groups was determined by aligning the sequences with genotype-specific consensus sequences.RESULTS Three nt(nt 1900-1929,2249-2284,2364-2398)and 2 aa(aa 117-120,159-167)hyper-conserved regions were shared by all the clinical groups.All groups showed a similar pattern of conservation,except for five nt regions(nt 1946-1992,2060-2095,2145-2175,2230-2250,2270-2293)and one aa region(aa 140-160),where CHB and LC,respectively,were less conserved(P<0.05).Some group-specific conserved regions were also observed at both nt(2306-2334 in CHB and 1935-1976 and 2402-2435 in LC)and aa(between aa 98-103 in CHB and 28-30 and 51-54 in LC)levels.No differences in insertion 展开更多
Gene therapy targeted to vascular cells repre- sents a promising approach for prevention and treatment of pathological conditions such as intimal hyperplasia, in-stent and post-angioplasty restenosis. In this context,...Gene therapy targeted to vascular cells repre- sents a promising approach for prevention and treatment of pathological conditions such as intimal hyperplasia, in-stent and post-angioplasty restenosis. In this context, polymeric non-viral gene delivery systems are a safe alternative to viral vectors but a further improvement in efficiency and cytocom- patibility is needed to improve their clinical success. Herein, a library of 24 branched polyethylenimine （bPEI） derivatives modified with hydrophobic moieties was synthesised, char- acterised and tested in vitro on primary vascular cells, aim- ing to identify delivery agents with superior transfection effi- ciency and low cytotoxicity. Low molecular weight PEIs （0.6, 1.2 and 2 kDa） were grafted with long （C18） and short （C3） aliphatic chains, featuring different unsaturation degrees and degrees of substitution. 0.6 kDa bPEI-based derivatives were generally ineffective in transfection on vascular smooth mus- cle cells （VSMCs）, while among the other derivatives some promising vectors were identified. Forcing polyplexes on the cell surface by means of centrifugation invariably boosted transfection levels but increased cytotoxicity as well. Of note, a propionyl-snbstituted derivative （PEI2-PrA1, C3：0） was the most effective on both VSMCs and endothelial cells （ECs）, with higher and more sustained gene expression in combi- nation with markedly lower cytotoxicity with respect to the gold standard 25 kDa bPEI. In addition, a linoleoyl-substi- tuted derivative （PEI1.2-LA6, C18：2） owing to its high effi- ciency in VSMCs and relative inefficacy in ECs, combined with tolerable cytotoxicity was proposed as a vector for spe- cific VSMCs targeting.展开更多
基金supported by the Major Program of Transgenic New Variety Breeding of China(2009ZX08009005)the National Natural Science Foundation of China(91435207 and 91735304)。
文摘Progress in plant breeding depends on the development of genetic resources,genetic knowledge,and breeding techniques.The core of plant breeding is the use of naturally occurring variation.At the beginning of the post-genomic era,a new concept of"breeding by design"was proposed,which aims to control all allelic variation for all genes of agronomic importance.In the past two decades,we have applied a three-step strategy for research on rice breeding by design.In the first step,we constructed a singlesegment substitution line(SSSL)library using Huajingxian 74(HJX74),an elite xian(indica)rice cultivar,as the recipient in which to assemble genes from the rice AA genome.In the second step,we identified a series of desirable genes in the SSSL library.In the third step,we designed new rice lines,and achieved the breeding goals by pyramiding target genes in the HJX74-SSSL library.This review introduces the background,concept,and strategy of breeding by design,as well as our achievements in rice breeding by design using the HJX74-SSSL platform.Our practice shows that target chromosome-segment substitution is a way to breeding by design.
基金Supported by Natural Science Foundation of Jiangsu Province(BK2009235)~~
文摘[Objective]The aim was to research the relationship between nucleotide substitutions rate and selective pressure.[Method]Synonymous and nonsynonymous substitutions and their ratios for some sorghum and maize genes in nucleus and organelle genomes were analyzed by statistical method,and comparative analysis of related functional genes were carried out.[Result]The pure selective pressures of the related functional genes were similar between nucleus and chloroplast genomes,but was lower in mitochondrial genome.The significant differences of nucleotide substitution rate between sorghum and maize orthologous genes in nucleus genome,and among different functional genes in nucleus genome were mainly due to the nonsynonymous substitution difference.[Conclusion]The molecular evolutional rate of different functional genes and different lineages were influenced by selective pressure.The differences of molecular evolutional rate among nucleus,chloroplast and mitochondria genomes had no direct relationship with selective pressure.
文摘Researches on the relationship between photosynthesis and wheat yield have equally attracted the attention of both domestic and overseas scholars. No report has existed so far on the study of the effects of exogenous chromosomes on photosynthesis using the substitution series as materials. In this research, Triticum aestivum cv. Chinese Spring-Lophopyrum elongatum （Host） A.Loeve disomic substitution series were used as materials and flag leaves as the measuring position. And the CI-310 Portable Photosynthesis System made by CID Co. in USA was used to measure the net rate of photosynthesis of flag leaves in different developing stages and also to correlate photosynthesis with yield. Results showed that, out of the whole developing stages, at the anthesis stage the line of DS2Ee （2A） had the highest photosynthetic rate, therefore it could be used in improving process of the character of kernel number. The flag leaves of DS4Ee （4A, 4B, 4D） lines demonstrated certain high net photosynthetic rate from heading to grain filling stage, so it is valuable in the researh of promoting the yield index like 1 000-grain weight through improvement of the photosynthetic rate at grain filling stage.
文摘The study of nucleotide substitution is very important both to our understanding of gene evolution and to reliable estimation of phylogenetic relationships. In this paper nucleotide substitution is assumed to be random and the Markov model is applied to the study of the evolution of genes. Then a non linear optimization approach is proposed for estimating substitution in real sequences. This substitution is called the 'Nucleotide State Transfer Matrix'. One of the most important conclusions from this work is that gene sequence evolution conforms to the Markov process. Also, some theoretical evidences for random evolution are given from energy analysis of DNA replication.
文摘A set of T. aestivum-L. elongatum substitution lines were studied on yellow rust resistance at seedling stage, inheritance of the resistance and esterase-5 (Est-5) analysis. The results demonstrated that L. elongatum carried a new yellow rust resistance gene(s), which was dominant and located on chromosome 3E of L. elongatum. The biochemical locus encoding Est-5 was also located on chromosome 3E, and was tentatively named Est-E5, which was co-segregant with the Yr gene(s) in wheat background. In addition, the transmission frequencies of chromosome 3E in 3A/3E and 3D/3E hybrids selfing were significantly higher than that of chromosome 3E in 3B/3E hybrid, which was probably due to the difference on genetic relationships among A, B, D and E genomes.
基金Supported by the Instituto de Salud CarlosⅢ,Spain,the European Regional Development Fund,No.PI18/01436。
文摘BACKGROUND Since it is currently not possible to eradicate hepatitis B virus(HBV)infection with existing treatments,research continues to uncover new therapeutic strategies.HBV core protein,encoded by the HBV core gene(HBC),intervenes in both structural and functional processes,and is a key protein in the HBV life cycle.For this reason,both the protein and the gene could be valuable targets for new therapeutic and diagnostic strategies.Moreover,alterations in the protein sequence could serve as potential markers of disease progression.AIM To detect,by next-generation sequencing,HBC hyper-conserved regions that could potentially be prognostic factors and targets for new therapies.METHODS Thirty-eight of 45 patients with chronic HBV initially selected were included and grouped according to liver disease stage[chronic hepatitis B infection without liver damage(CHB,n=16),liver cirrhosis(LC,n=5),and hepatocellular carcinoma(HCC,n=17)].HBV DNA was extracted from patients’plasma.A region between nucleotide(nt)1863 and 2483,which includes HBC,was amplified and analyzed by next-generation sequencing(Illumina Mi Seq platform).Sequences were genotyped by distance-based discriminant analysis.General and intergroup nt and amino acid(aa)conservation was determined by sliding window analysis.The presence of nt insertion and deletions and/or aa substitutions in the different groups was determined by aligning the sequences with genotype-specific consensus sequences.RESULTS Three nt(nt 1900-1929,2249-2284,2364-2398)and 2 aa(aa 117-120,159-167)hyper-conserved regions were shared by all the clinical groups.All groups showed a similar pattern of conservation,except for five nt regions(nt 1946-1992,2060-2095,2145-2175,2230-2250,2270-2293)and one aa region(aa 140-160),where CHB and LC,respectively,were less conserved(P<0.05).Some group-specific conserved regions were also observed at both nt(2306-2334 in CHB and 1935-1976 and 2402-2435 in LC)and aa(between aa 98-103 in CHB and 28-30 and 51-54 in LC)levels.No differences in insertion
基金financially supported by the Natural Science and Engineering Research Council of Canada, (Discovery Grant to UludagH and Mantovani D)the Canadian Institute for Health Research (Operating grant to Uludag H)the Fonds de Recherche du Quebec sur les Natures et Technologies (Bilateral Grant to Mantovani D)
文摘Gene therapy targeted to vascular cells repre- sents a promising approach for prevention and treatment of pathological conditions such as intimal hyperplasia, in-stent and post-angioplasty restenosis. In this context, polymeric non-viral gene delivery systems are a safe alternative to viral vectors but a further improvement in efficiency and cytocom- patibility is needed to improve their clinical success. Herein, a library of 24 branched polyethylenimine （bPEI） derivatives modified with hydrophobic moieties was synthesised, char- acterised and tested in vitro on primary vascular cells, aim- ing to identify delivery agents with superior transfection effi- ciency and low cytotoxicity. Low molecular weight PEIs （0.6, 1.2 and 2 kDa） were grafted with long （C18） and short （C3） aliphatic chains, featuring different unsaturation degrees and degrees of substitution. 0.6 kDa bPEI-based derivatives were generally ineffective in transfection on vascular smooth mus- cle cells （VSMCs）, while among the other derivatives some promising vectors were identified. Forcing polyplexes on the cell surface by means of centrifugation invariably boosted transfection levels but increased cytotoxicity as well. Of note, a propionyl-snbstituted derivative （PEI2-PrA1, C3：0） was the most effective on both VSMCs and endothelial cells （ECs）, with higher and more sustained gene expression in combi- nation with markedly lower cytotoxicity with respect to the gold standard 25 kDa bPEI. In addition, a linoleoyl-substi- tuted derivative （PEI1.2-LA6, C18：2） owing to its high effi- ciency in VSMCs and relative inefficacy in ECs, combined with tolerable cytotoxicity was proposed as a vector for spe- cific VSMCs targeting.
