粘虫 Mythimna separata（Walker）是一种迁飞性害虫，严重危害玉米、水稻、小麦等粮食作物。 SSR 是指以1～6个核苷酸为基本重复单位的串联重复 DNA 序列。 SSR 位点的信息分析为粘虫扩散、迁飞和交配等行为分子机制的研究以及粘虫的...粘虫 Mythimna separata（Walker）是一种迁飞性害虫，严重危害玉米、水稻、小麦等粮食作物。 SSR 是指以1～6个核苷酸为基本重复单位的串联重复 DNA 序列。 SSR 位点的信息分析为粘虫扩散、迁飞和交配等行为分子机制的研究以及粘虫的综合防治奠定理论基础。本研究基于高通量测序获得的粘虫转录组数据，利用软件 msatcom‐mander 发掘粘虫 SSR 位点。结果从20776条转录组 Unigenes 中共搜索出400个 SSR ，分布于372条 Unigenes 中。在粘虫转录组 SSR 中，三核苷酸重复的数量最为丰富，有271个；其次是二核苷酸和单核苷酸重复，分别是70个和49个；四至六核苷酸重复的数量都很少，共10个。粘虫转录组 SSR 共包含24种重复基元，其中 CCG／CGG 是优势重复基元类型，有69个；其次是 AAG／CTT ，有57个。 CG／CG 有18个，在二核苷酸重复基元中所占的比例达到25.7％。此研究发掘到的 SSR 位点将为粘虫遗传图谱的构建、遗传多样性分析、亲缘关系分析等提供丰富的分子标记。展开更多
目的探讨富含亮氨酸重复序列/Ⅲ型纤维连接蛋白4(leucine-rich repeat and fibronectin typeⅢdomain-containing protein 4,LRFN4)在胃癌组织中的表达情况,并分析LRFN4表达水平与胃癌患者临床病理参数和预后的关系。方法收集2017年1月...目的探讨富含亮氨酸重复序列/Ⅲ型纤维连接蛋白4(leucine-rich repeat and fibronectin typeⅢdomain-containing protein 4,LRFN4)在胃癌组织中的表达情况,并分析LRFN4表达水平与胃癌患者临床病理参数和预后的关系。方法收集2017年1月至12月于中山大学附属第一医院胃肠外科中心确诊并行手术治疗的胃癌患者组织标本8对(包含胃癌组织和癌旁正常组织),并选取2004年1月至2005年12月在同一中心行手术治疗的117例胃癌患者的术后组织标本制成胃癌组织芯片。分析LRFN4在癌症基因组图谱(the cancer genome atlas,TCGA)数据库胃癌数据集中的表达情况,应用蛋白质印迹法及实时荧光定量聚合酶链反应检测LRFN4在8对新鲜胃癌组织及癌旁正常组织中的表达,应用免疫组织化学检测LRFN4在胃癌组织芯片中的表达。分析不同LRFN4表达水平的胃癌患者其临床病理参数的差异。应用Kaplan-Meier法分析不同LRFN4表达水平的胃癌患者的预后情况。应用单因素和多因素Cox回归分析法分析胃癌患者预后的影响因素。结果LRFN4在TCGA数据库胃癌数据集的胃癌组织以及新鲜胃癌组织中呈高表达状态。LRFN4高表达的患者,表现出更大的肿瘤大小以及更为进展的T分期、N分期、M分期和TNM分期(均P<0.05),其预后也较差(P<0.001)。单因素和多因素Cox回归分析提示LRFN4在胃癌组织中的高表达是影响胃癌患者预后的独立危险因素(HR=3.898,95%CI 2.273~6.686,P<0.001)。结论胃癌组织中LRFN4高表达与患者较差的预后相关,可能成为预测胃癌患者预后的生物标志物之一。展开更多
小麦条锈病是由小麦条锈菌引起的气传性真菌病害,在全球小麦种植区广泛发生,严重威胁小麦的安全生产。充分利用寄主抗病性是防治条锈病最经济的方法。富含亮氨酸重复类受体蛋白激酶(leucine-rich repeat receptor-like protein kinase,L...小麦条锈病是由小麦条锈菌引起的气传性真菌病害,在全球小麦种植区广泛发生,严重威胁小麦的安全生产。充分利用寄主抗病性是防治条锈病最经济的方法。富含亮氨酸重复类受体蛋白激酶(leucine-rich repeat receptor-like protein kinase,LRR-RLK)作为RLK家族最大分支的模式识别受体,在防御病菌入侵方面发挥重要作用。本研究系统鉴定了小麦LRR-RLKs家族成员,从小麦与条锈菌互作的转录组数据库中筛选出了43个显著差异表达的LRR-RLKs,最后选取了在亲和与非亲和互作过程中都显著上调表达的TaRLK3D.2为对象,利用实时定量PCR、亚细胞定位及大麦条纹花叶病毒介导的基因沉默初步研究了该基因在小麦与条锈菌互作过程中的功能。结果表明TaRLK3D.2定位于植物细胞膜,瞬时沉默TaRLK3.2后,条锈菌侵染严重度显著下降,生长发育变慢。作为典型的LRR-RLKs家族成员,TaRLK3D.2在小麦条锈菌侵染过程中可能行使感病功能。本研究初步明确了该基因的功能,以该基因为靶标通过基因编辑或诱变获取稳定的功能缺失突变体可创制持久抗条锈病材料,为生产服务。展开更多
Background： Ovarian serous adenocarcinoma can be divided into low- and high-grade tumors, which exhibit substantial differences in pathogenesis, clinicopathology, and prognosis. This study aimed to investigate the d...Background： Ovarian serous adenocarcinoma can be divided into low- and high-grade tumors, which exhibit substantial differences in pathogenesis, clinicopathology, and prognosis. This study aimed to investigate the difl＇erences in the PH domain leucine-rich repeat protein phosphatase （PHLPP）, tbrkhead llomeobox type O3a （FoxO3a）, and RAD51 protein expressions, and their associations with prognosis in patients with low- and high-grade ovarian serous adenocarcinomas. Methods： The PH LPP, FoxO3a, and RA D51 protein expressions were examined in 94 high- and 26 low-grade ovarian serous adenocarcinomas by immunohistochemistry. The differences in expression and their relationships with pathological features and prognosis were analyzed. Results： In high-grade serous adenocarcinomas, the positive rates of PHLPP and goxO3a were 24.5% and 26.6%, while in low-grade tumors, they were 23.1% and 26.9%, respectively （P 〈 0.05 vs. the control specimens; low- vs. high-grade： P 〉 0.（15）. The positive rates of RAD51 were 70.2% and 65.4% in high- and low-grade serous adenocarcinomas, respectively （P 〈 0.（15 vs. the control specimens; low- vs. high-grade： P 〉 0.05）. Meanwhile, in high-grade tumors, Stage Ⅲ/Ⅳ tumors and lymph node and omental metastases were significantly associated with lower PHLPP and FoxO3a and higher RAD51 expression. The 5-year survival rates of patients with PHLPP- and FoxO3a-positive high-grade tumors （43.5% and 36.0%） were significantly higher than in patients with PHLPP-negative tumors （5.6% and 7.2%, respectively; P 〈 0.05）. Similarly, the 5-year survival rate of RAD5 l-positive patients （3.0%） was significantly lower than in negative patients （42.9%： P〈 0.05）. In low-grade tumors, the PHLPP, FoxO3a, and RAD51 expressions were not significantly correlated with lymph node metastasis, omental metastasis, Federation of Gynecology and Obstetrics stage, or prognosis. Conclusions： Abnormal PHLPP, FoxO3a, and RAD51 protein expressions may be involved展开更多
Bit-interleaved coded modulation (BICM) is suitable to bandwidth-efficient communication systems. Hybrid automatic repeat request (HARQ) can provide more reliability to high-speed wireless data transmission. A new pat...Bit-interleaved coded modulation (BICM) is suitable to bandwidth-efficient communication systems. Hybrid automatic repeat request (HARQ) can provide more reliability to high-speed wireless data transmission. A new path weight complementary convolutional (PWCC) code used in the type-Ⅱ BICM-HARQ system is proposed. The PWCC code is composed of the original code and the complimentary code. The path in trellis with large hamming weight of the complimentary code is designed to compensate for the path in trellis with small hamming weight of the original code. Hence, both of the original code and the complimentary code can achieve the performance of the good code criterion of corresponding code rate. The throughput efficiency of the BICM-HARQ system wit PWCC code is higher than repeat code system, a little higher than puncture code system in low signal-to-noise ratio (SNR) values and much higher than puncture code system, the same as repeat code system in high SNR values. These results are confirmed by the simulation.展开更多
文摘粘虫 Mythimna separata（Walker）是一种迁飞性害虫，严重危害玉米、水稻、小麦等粮食作物。 SSR 是指以1～6个核苷酸为基本重复单位的串联重复 DNA 序列。 SSR 位点的信息分析为粘虫扩散、迁飞和交配等行为分子机制的研究以及粘虫的综合防治奠定理论基础。本研究基于高通量测序获得的粘虫转录组数据，利用软件 msatcom‐mander 发掘粘虫 SSR 位点。结果从20776条转录组 Unigenes 中共搜索出400个 SSR ，分布于372条 Unigenes 中。在粘虫转录组 SSR 中，三核苷酸重复的数量最为丰富，有271个；其次是二核苷酸和单核苷酸重复，分别是70个和49个；四至六核苷酸重复的数量都很少，共10个。粘虫转录组 SSR 共包含24种重复基元，其中 CCG／CGG 是优势重复基元类型，有69个；其次是 AAG／CTT ，有57个。 CG／CG 有18个，在二核苷酸重复基元中所占的比例达到25.7％。此研究发掘到的 SSR 位点将为粘虫遗传图谱的构建、遗传多样性分析、亲缘关系分析等提供丰富的分子标记。
文摘目的探讨富含亮氨酸重复序列/Ⅲ型纤维连接蛋白4(leucine-rich repeat and fibronectin typeⅢdomain-containing protein 4,LRFN4)在胃癌组织中的表达情况,并分析LRFN4表达水平与胃癌患者临床病理参数和预后的关系。方法收集2017年1月至12月于中山大学附属第一医院胃肠外科中心确诊并行手术治疗的胃癌患者组织标本8对(包含胃癌组织和癌旁正常组织),并选取2004年1月至2005年12月在同一中心行手术治疗的117例胃癌患者的术后组织标本制成胃癌组织芯片。分析LRFN4在癌症基因组图谱(the cancer genome atlas,TCGA)数据库胃癌数据集中的表达情况,应用蛋白质印迹法及实时荧光定量聚合酶链反应检测LRFN4在8对新鲜胃癌组织及癌旁正常组织中的表达,应用免疫组织化学检测LRFN4在胃癌组织芯片中的表达。分析不同LRFN4表达水平的胃癌患者其临床病理参数的差异。应用Kaplan-Meier法分析不同LRFN4表达水平的胃癌患者的预后情况。应用单因素和多因素Cox回归分析法分析胃癌患者预后的影响因素。结果LRFN4在TCGA数据库胃癌数据集的胃癌组织以及新鲜胃癌组织中呈高表达状态。LRFN4高表达的患者,表现出更大的肿瘤大小以及更为进展的T分期、N分期、M分期和TNM分期(均P<0.05),其预后也较差(P<0.001)。单因素和多因素Cox回归分析提示LRFN4在胃癌组织中的高表达是影响胃癌患者预后的独立危险因素(HR=3.898,95%CI 2.273~6.686,P<0.001)。结论胃癌组织中LRFN4高表达与患者较差的预后相关,可能成为预测胃癌患者预后的生物标志物之一。
文摘小麦条锈病是由小麦条锈菌引起的气传性真菌病害,在全球小麦种植区广泛发生,严重威胁小麦的安全生产。充分利用寄主抗病性是防治条锈病最经济的方法。富含亮氨酸重复类受体蛋白激酶(leucine-rich repeat receptor-like protein kinase,LRR-RLK)作为RLK家族最大分支的模式识别受体,在防御病菌入侵方面发挥重要作用。本研究系统鉴定了小麦LRR-RLKs家族成员,从小麦与条锈菌互作的转录组数据库中筛选出了43个显著差异表达的LRR-RLKs,最后选取了在亲和与非亲和互作过程中都显著上调表达的TaRLK3D.2为对象,利用实时定量PCR、亚细胞定位及大麦条纹花叶病毒介导的基因沉默初步研究了该基因在小麦与条锈菌互作过程中的功能。结果表明TaRLK3D.2定位于植物细胞膜,瞬时沉默TaRLK3.2后,条锈菌侵染严重度显著下降,生长发育变慢。作为典型的LRR-RLKs家族成员,TaRLK3D.2在小麦条锈菌侵染过程中可能行使感病功能。本研究初步明确了该基因的功能,以该基因为靶标通过基因编辑或诱变获取稳定的功能缺失突变体可创制持久抗条锈病材料,为生产服务。
文摘Background： Ovarian serous adenocarcinoma can be divided into low- and high-grade tumors, which exhibit substantial differences in pathogenesis, clinicopathology, and prognosis. This study aimed to investigate the difl＇erences in the PH domain leucine-rich repeat protein phosphatase （PHLPP）, tbrkhead llomeobox type O3a （FoxO3a）, and RAD51 protein expressions, and their associations with prognosis in patients with low- and high-grade ovarian serous adenocarcinomas. Methods： The PH LPP, FoxO3a, and RA D51 protein expressions were examined in 94 high- and 26 low-grade ovarian serous adenocarcinomas by immunohistochemistry. The differences in expression and their relationships with pathological features and prognosis were analyzed. Results： In high-grade serous adenocarcinomas, the positive rates of PHLPP and goxO3a were 24.5% and 26.6%, while in low-grade tumors, they were 23.1% and 26.9%, respectively （P 〈 0.05 vs. the control specimens; low- vs. high-grade： P 〉 0.（15）. The positive rates of RAD51 were 70.2% and 65.4% in high- and low-grade serous adenocarcinomas, respectively （P 〈 0.（15 vs. the control specimens; low- vs. high-grade： P 〉 0.05）. Meanwhile, in high-grade tumors, Stage Ⅲ/Ⅳ tumors and lymph node and omental metastases were significantly associated with lower PHLPP and FoxO3a and higher RAD51 expression. The 5-year survival rates of patients with PHLPP- and FoxO3a-positive high-grade tumors （43.5% and 36.0%） were significantly higher than in patients with PHLPP-negative tumors （5.6% and 7.2%, respectively; P 〈 0.05）. Similarly, the 5-year survival rate of RAD5 l-positive patients （3.0%） was significantly lower than in negative patients （42.9%： P〈 0.05）. In low-grade tumors, the PHLPP, FoxO3a, and RAD51 expressions were not significantly correlated with lymph node metastasis, omental metastasis, Federation of Gynecology and Obstetrics stage, or prognosis. Conclusions： Abnormal PHLPP, FoxO3a, and RAD51 protein expressions may be involved
基金the National Natural Science Foundation of China(Nos. 60302006 and 60462002)
文摘Bit-interleaved coded modulation (BICM) is suitable to bandwidth-efficient communication systems. Hybrid automatic repeat request (HARQ) can provide more reliability to high-speed wireless data transmission. A new path weight complementary convolutional (PWCC) code used in the type-Ⅱ BICM-HARQ system is proposed. The PWCC code is composed of the original code and the complimentary code. The path in trellis with large hamming weight of the complimentary code is designed to compensate for the path in trellis with small hamming weight of the original code. Hence, both of the original code and the complimentary code can achieve the performance of the good code criterion of corresponding code rate. The throughput efficiency of the BICM-HARQ system wit PWCC code is higher than repeat code system, a little higher than puncture code system in low signal-to-noise ratio (SNR) values and much higher than puncture code system, the same as repeat code system in high SNR values. These results are confirmed by the simulation.
