Hybridization and polyploidization have made great contributions to speciation,heterosis,and agricultural production within plants,but there is still limited understanding and utilization in animals.Subgenome structur...Hybridization and polyploidization have made great contributions to speciation,heterosis,and agricultural production within plants,but there is still limited understanding and utilization in animals.Subgenome structure and expression reorganization and cooperation post hybridization and polyploidization are essential for speciation and allopolyploid success.However,the mechanisms have not yet been comprehensively assessed in animals.Here,we produced a high-fidelity reference genome sequence for common carp,a typical allotetraploid fish species cultured worldwide.This genome enabled in-depth analysis of the evolution of subgenome architecture and expression responses.Most genes were expressed with subgenome biases,with a trend of transition from the expression of subgenome A during the early stages to that of subgenome B during the late stages of embryonic development.While subgenome A evolved more rapidly,subgenome B contributed to a greater level of expression during development and under stressful conditions.Stable dominant patterns for homoeologous gene pairs both during development and under thermal stress suggest a potential fixed heterosis in the allotetraploid genome.Preferentially expressing either copy of a homoeologous gene at higher levels to confer development and response to stress indicates the dominant effect of heterosis.The plasticity of subgenomes and their shifting of dominant expression during early development,and in response to stressful conditions,provide novel insights into the molecular basis of the successful speciation,evolution,and heterosis of the allotetraploid common carp.展开更多
By employing the NCEP/NCAR reanalysis data sets (1000-10hPa, 2.5°× 2.5°), the characteristics have been analyzed of the structure and evolution of an easterly vortex over the tropical upper troposphere ...By employing the NCEP/NCAR reanalysis data sets (1000-10hPa, 2.5°× 2.5°), the characteristics have been analyzed of the structure and evolution of an easterly vortex over the tropical upper troposphere relating to the east-west direction shift of the subtropical anticyclone over the Western Pacific Ocean. It is shown that there exists a westward shift simultaneously between the anticyclone and the vortex locating south of it. The anticyclone retreats eastward abnormally while the easterly encounters with the westerly around the same longitudes as they move from the opposite directions. The former is an upper weather system, extending from mid-troposphere to the height of 50 hPa with the center locating on 200 hPa. The vertical thermal distribution illustrates the characteristics of being"warm in the upper layer but cold in the lower layer". The divergence effect and the vertical motion change largely within the east and west sides of the easterly vortex and ascending branch transforms to descending branch near its center.展开更多
Objective video quality assessment plays a very important role in multimedia signal processing. Several extensions of the structural similarity （SSIM） index could not predict the quality of the video sequence effect...Objective video quality assessment plays a very important role in multimedia signal processing. Several extensions of the structural similarity （SSIM） index could not predict the quality of the video sequence effectively. In this paper we propose a structural similarity quality metric for videos based on a spatial-temporal visual attention model. This model acquires the motion attended region and the distortion attended region by computing the motion features and the distortion contrast. It mimics the visual attention shifting between the two attended regions and takes the burst of error into account by introducing the non-linear weighting fimctions to give a much higher weighting factor to the extremely damaged frames. The proposed metric based on the model renders the final object quality rating of the whole video sequence and is validated using the 50 Hz video sequences of Video Quality Experts Group Phase I test database.展开更多
基金supported by the National Key R&D Program of China(2019YFE0119000)the National Science Fund for Distinguished Young Scholars(32225049)+1 种基金the National Natural Science Foundation of China(31872561)the Alliance of International Science Organizations(ANSO-CR-PP-2021-03).
文摘Hybridization and polyploidization have made great contributions to speciation,heterosis,and agricultural production within plants,but there is still limited understanding and utilization in animals.Subgenome structure and expression reorganization and cooperation post hybridization and polyploidization are essential for speciation and allopolyploid success.However,the mechanisms have not yet been comprehensively assessed in animals.Here,we produced a high-fidelity reference genome sequence for common carp,a typical allotetraploid fish species cultured worldwide.This genome enabled in-depth analysis of the evolution of subgenome architecture and expression responses.Most genes were expressed with subgenome biases,with a trend of transition from the expression of subgenome A during the early stages to that of subgenome B during the late stages of embryonic development.While subgenome A evolved more rapidly,subgenome B contributed to a greater level of expression during development and under stressful conditions.Stable dominant patterns for homoeologous gene pairs both during development and under thermal stress suggest a potential fixed heterosis in the allotetraploid genome.Preferentially expressing either copy of a homoeologous gene at higher levels to confer development and response to stress indicates the dominant effect of heterosis.The plasticity of subgenomes and their shifting of dominant expression during early development,and in response to stressful conditions,provide novel insights into the molecular basis of the successful speciation,evolution,and heterosis of the allotetraploid common carp.
基金Open Research Fund for 2006 from State Key Laboratory Severe Weather, Chinese Academyof Meteorological Sciences (2006LASW08)Development and Planning Project for Key State FundamentalResearch (2006CB403607 2004CB418300)
文摘By employing the NCEP/NCAR reanalysis data sets (1000-10hPa, 2.5°× 2.5°), the characteristics have been analyzed of the structure and evolution of an easterly vortex over the tropical upper troposphere relating to the east-west direction shift of the subtropical anticyclone over the Western Pacific Ocean. It is shown that there exists a westward shift simultaneously between the anticyclone and the vortex locating south of it. The anticyclone retreats eastward abnormally while the easterly encounters with the westerly around the same longitudes as they move from the opposite directions. The former is an upper weather system, extending from mid-troposphere to the height of 50 hPa with the center locating on 200 hPa. The vertical thermal distribution illustrates the characteristics of being"warm in the upper layer but cold in the lower layer". The divergence effect and the vertical motion change largely within the east and west sides of the easterly vortex and ascending branch transforms to descending branch near its center.
文摘Objective video quality assessment plays a very important role in multimedia signal processing. Several extensions of the structural similarity （SSIM） index could not predict the quality of the video sequence effectively. In this paper we propose a structural similarity quality metric for videos based on a spatial-temporal visual attention model. This model acquires the motion attended region and the distortion attended region by computing the motion features and the distortion contrast. It mimics the visual attention shifting between the two attended regions and takes the burst of error into account by introducing the non-linear weighting fimctions to give a much higher weighting factor to the extremely damaged frames. The proposed metric based on the model renders the final object quality rating of the whole video sequence and is validated using the 50 Hz video sequences of Video Quality Experts Group Phase I test database.
