A better understanding of population structure and genetic diversity among cassava germplasm for African cassava mosaic disease and fresh root yield traits is useful for cassava improvement programme. Phenotype-based ...A better understanding of population structure and genetic diversity among cassava germplasm for African cassava mosaic disease and fresh root yield traits is useful for cassava improvement programme. Phenotype-based selection for these traits is cumbersome due to phenotypic plasticity and difficulty in screening of phenotypic-induced variations. This study assessed quantitative trait loci (QTL) regions associated with African cassava mosaic disease (ACMD) and fresh storage root yield (FSRY) in 131 cassava (Manihot esculenta) genotypes using a genome-wide association study (GWAS). The single nucleotide polymorphism (SNP) loci and associated candidate genes, when validated, would be a valuable resource for marker-assisted selection in the breeding process for development of new cassava genotypes with improved resistance to ACMD and desirable high root yield. Population structure analysis using 12,500 SNPs differentiated the 131 genotypes into five distinct sub-groups (K = 5). Marker-trait association (MTA) analysis using the generalized linear model identified two QTL regions significant for ACMD and three for FSRY. This study demonstrated that DArTseq markers are useful genomic resources for genome-wide association studies of ACMD and FSRY traits in cassava for the acceleration of varietal development and release.展开更多
Sampling plays an important role in acquiring precise soil information required in modern agricultural production worldwide, which determines both the cost and quality of final soil mapping products. For sampling desi...Sampling plays an important role in acquiring precise soil information required in modern agricultural production worldwide, which determines both the cost and quality of final soil mapping products. For sampling design, it has been proposed possibile to transfer the relationships between kriging variance and sampling grid spacing from an area with existing information to other areas with similar soil-forming environments. However, this approach is challenged in practice because of two problems: i) different population vaxiograms among similar areas and ii) sampling errors in estimated variograms. This study evaluated the effects of these two problems on the transferability of the relationships between kriging variance and sampling grid spacing, by using spatial data simulated with three variograms and soil samples collected from four grasslands in Ireland with similar soil-forming environments. Results showed that the variograms suggested by different samples collected with the same grid spacing in the same or similar areas were different, leading to a range of mean kriging variance (MKV) for each grid spacing. With increasing grid spacing, the variation of MKV for a specific grid spacing increased and deviated more from the MKV generated using the population variograms. As a result, the spatial transferability of the relationships between kriging variance and grid spacing for sampling design was limited.展开更多
Within savanna environments, movements of elephant are influenced by changes in climate especially seasonal rainfall. In this study, we investigated the possible changes in elephant population based on projected rainf...Within savanna environments, movements of elephant are influenced by changes in climate especially seasonal rainfall. In this study, we investigated the possible changes in elephant population based on projected rainfall changes using regional climate models (RCM) and Representative Concentration Pathways (RCPs). The relationship between elephant and rainfall was modelled against annual, wet season, dry season rainfall based on various time lags. Future relation between elephant and rainfall was projected based on three RCPs;2.6, 4.5 and 8.5. There was a strong linear relationship between elephant and October-November-December (OND) rains with time lag of 13 years (Y = −4016.43 + 19.11x, r2 = 0.459, P = 0.006). The rainfall trends for RCP 2.6 and 4.5 showed a slight increase in annual rainfall for the period 2006-2100 but driven by OND increases. Rainfall increase for RCP 8.5 was significant and was driven by increase in both March-April-May (MAM) and OND. These rainfall dynamics had influence on the projected elephant population in the Amboseli ecosystem. For RCP 2.6 and 4.5 the elephant population increase was 2455 and 2814 respectively. RCP 8.5 elephant population doubled to an average of 3348 elephants. In all the RCPs there are seasonal and yearly variations and absolute number varies from the average. The range of variation is small in RCPs 2.6 and 4.5 compared to RCP 8.5. Evidently, elephant population will increase based on projected rainfall projections surpassing park capacity. It therefore, requires that the Park authority put in place measures that could contain these numbers including opening of blocked wildlife corridors, maintain the cross border movement of Amboseli elephant with Tanzania in that case ensure there is no poaching. Lastly, work with local communities so that they can benefit from tourism through setting up conservancies through which they could minimize the human elephant conflicts based on the projected elephant population.展开更多
文摘A better understanding of population structure and genetic diversity among cassava germplasm for African cassava mosaic disease and fresh root yield traits is useful for cassava improvement programme. Phenotype-based selection for these traits is cumbersome due to phenotypic plasticity and difficulty in screening of phenotypic-induced variations. This study assessed quantitative trait loci (QTL) regions associated with African cassava mosaic disease (ACMD) and fresh storage root yield (FSRY) in 131 cassava (Manihot esculenta) genotypes using a genome-wide association study (GWAS). The single nucleotide polymorphism (SNP) loci and associated candidate genes, when validated, would be a valuable resource for marker-assisted selection in the breeding process for development of new cassava genotypes with improved resistance to ACMD and desirable high root yield. Population structure analysis using 12,500 SNPs differentiated the 131 genotypes into five distinct sub-groups (K = 5). Marker-trait association (MTA) analysis using the generalized linear model identified two QTL regions significant for ACMD and three for FSRY. This study demonstrated that DArTseq markers are useful genomic resources for genome-wide association studies of ACMD and FSRY traits in cassava for the acceleration of varietal development and release.
基金?nancially supported by the National Natural Science Foundation of China (Nos. 41541006 and 41771246)co-funded by Enterprise Ireland and the European Regional Development Fund (ERDF) under the National Strategic Reference Framework (NSRF) 2007–2013
文摘Sampling plays an important role in acquiring precise soil information required in modern agricultural production worldwide, which determines both the cost and quality of final soil mapping products. For sampling design, it has been proposed possibile to transfer the relationships between kriging variance and sampling grid spacing from an area with existing information to other areas with similar soil-forming environments. However, this approach is challenged in practice because of two problems: i) different population vaxiograms among similar areas and ii) sampling errors in estimated variograms. This study evaluated the effects of these two problems on the transferability of the relationships between kriging variance and sampling grid spacing, by using spatial data simulated with three variograms and soil samples collected from four grasslands in Ireland with similar soil-forming environments. Results showed that the variograms suggested by different samples collected with the same grid spacing in the same or similar areas were different, leading to a range of mean kriging variance (MKV) for each grid spacing. With increasing grid spacing, the variation of MKV for a specific grid spacing increased and deviated more from the MKV generated using the population variograms. As a result, the spatial transferability of the relationships between kriging variance and grid spacing for sampling design was limited.
文摘Within savanna environments, movements of elephant are influenced by changes in climate especially seasonal rainfall. In this study, we investigated the possible changes in elephant population based on projected rainfall changes using regional climate models (RCM) and Representative Concentration Pathways (RCPs). The relationship between elephant and rainfall was modelled against annual, wet season, dry season rainfall based on various time lags. Future relation between elephant and rainfall was projected based on three RCPs;2.6, 4.5 and 8.5. There was a strong linear relationship between elephant and October-November-December (OND) rains with time lag of 13 years (Y = −4016.43 + 19.11x, r2 = 0.459, P = 0.006). The rainfall trends for RCP 2.6 and 4.5 showed a slight increase in annual rainfall for the period 2006-2100 but driven by OND increases. Rainfall increase for RCP 8.5 was significant and was driven by increase in both March-April-May (MAM) and OND. These rainfall dynamics had influence on the projected elephant population in the Amboseli ecosystem. For RCP 2.6 and 4.5 the elephant population increase was 2455 and 2814 respectively. RCP 8.5 elephant population doubled to an average of 3348 elephants. In all the RCPs there are seasonal and yearly variations and absolute number varies from the average. The range of variation is small in RCPs 2.6 and 4.5 compared to RCP 8.5. Evidently, elephant population will increase based on projected rainfall projections surpassing park capacity. It therefore, requires that the Park authority put in place measures that could contain these numbers including opening of blocked wildlife corridors, maintain the cross border movement of Amboseli elephant with Tanzania in that case ensure there is no poaching. Lastly, work with local communities so that they can benefit from tourism through setting up conservancies through which they could minimize the human elephant conflicts based on the projected elephant population.