Automatic pectoral muscle removal on medio-lateral oblique (MLO) view of mammogram is an essential step for many mammographic processing algorithms. However,it is still a very difficult task since the sizes,the shapes...Automatic pectoral muscle removal on medio-lateral oblique (MLO) view of mammogram is an essential step for many mammographic processing algorithms. However,it is still a very difficult task since the sizes,the shapes and the intensity contrasts of pectoral muscles change greatly from one MLO view to another. In this paper,we propose a novel method based on a discrete time Markov chain (DTMC) and an active contour model to automatically detect the pectoral muscle boundary. DTMC is used to model two important characteristics of the pectoral muscle edge,i.e.,continuity and uncertainty. After obtaining a rough boundary,an active contour model is applied to refine the detection results. The experimental results on images from the Digital Database for Screening Mammography (DDSM) showed that our method can overcome many limitations of existing algorithms. The false positive (FP) and false negative (FN) pixel percentages are less than 5% in 77.5% mammograms. The detection precision of 91% meets the clinical requirement.展开更多
Background Broilers stand out as one of the fastest-growing livestock globally,making a substantial contribution to animal meat production.However,the molecular and epigenetic mechanisms underlying the rapid growth an...Background Broilers stand out as one of the fastest-growing livestock globally,making a substantial contribution to animal meat production.However,the molecular and epigenetic mechanisms underlying the rapid growth and development of broiler chickens are still unclear.This study aims to explore muscle development patterns and regulatory networks during the postnatal rapid growth phase of fast-growing broilers.We measured the growth performance of Cornish(CC)and White Plymouth Rock(RR)over a 42-d period.Pectoral muscle samples from both CC and RR were randomly collected at day 21 after hatching(D21)and D42 for RNA-seq and ATAC-seq library construction.Results The consistent increase in body weight and pectoral muscle weight across both breeds was observed as they matured,with CC outpacing RR in terms of weight at each stage of development.Differential expression analysis identified 398 and 1,129 genes in the two dimensions of breeds and ages,respectively.A total of 75,149 ATAC-seq peaks were annotated in promoter,exon,intron and intergenic regions,with a higher number of peaks in the promoter and intronic regions.The age-biased genes and breed-biased genes of RNA-seq were combined with the ATAC-seq data for subsequent analysis.The results spotlighted the upregulation of ACTC1 and FDPS at D21,which were primarily associated with muscle structure development by gene cluster enrichment.Additionally,a noteworthy upregulation of MUSTN1,FOS and TGFB3 was spotted in broiler chickens at D42,which were involved in cell differentiation and muscle regeneration after injury,suggesting a regulatory role of muscle growth and repair.Conclusions This work provided a regulatory network of postnatal broiler chickens and revealed ACTC1 and MUSTN1 as the key responsible for muscle development and regeneration.Our findings highlight that rapid growth in broiler chickens triggers ongoing muscle damage and subsequent regeneration.These findings provide a foundation for future research to investigate the functional aspects of muscle deve展开更多
基金Project (No. 60505009) supported by the National Natural Science Foundation of China
文摘Automatic pectoral muscle removal on medio-lateral oblique (MLO) view of mammogram is an essential step for many mammographic processing algorithms. However,it is still a very difficult task since the sizes,the shapes and the intensity contrasts of pectoral muscles change greatly from one MLO view to another. In this paper,we propose a novel method based on a discrete time Markov chain (DTMC) and an active contour model to automatically detect the pectoral muscle boundary. DTMC is used to model two important characteristics of the pectoral muscle edge,i.e.,continuity and uncertainty. After obtaining a rough boundary,an active contour model is applied to refine the detection results. The experimental results on images from the Digital Database for Screening Mammography (DDSM) showed that our method can overcome many limitations of existing algorithms. The false positive (FP) and false negative (FN) pixel percentages are less than 5% in 77.5% mammograms. The detection precision of 91% meets the clinical requirement.
基金supported by the National Key Research and Development Program of China(2022YFF1000204)the National Natural Science Foundation of China(32102535)the Key Research and Development Program of Hainan province(ZDYF2023XDNY036)。
文摘Background Broilers stand out as one of the fastest-growing livestock globally,making a substantial contribution to animal meat production.However,the molecular and epigenetic mechanisms underlying the rapid growth and development of broiler chickens are still unclear.This study aims to explore muscle development patterns and regulatory networks during the postnatal rapid growth phase of fast-growing broilers.We measured the growth performance of Cornish(CC)and White Plymouth Rock(RR)over a 42-d period.Pectoral muscle samples from both CC and RR were randomly collected at day 21 after hatching(D21)and D42 for RNA-seq and ATAC-seq library construction.Results The consistent increase in body weight and pectoral muscle weight across both breeds was observed as they matured,with CC outpacing RR in terms of weight at each stage of development.Differential expression analysis identified 398 and 1,129 genes in the two dimensions of breeds and ages,respectively.A total of 75,149 ATAC-seq peaks were annotated in promoter,exon,intron and intergenic regions,with a higher number of peaks in the promoter and intronic regions.The age-biased genes and breed-biased genes of RNA-seq were combined with the ATAC-seq data for subsequent analysis.The results spotlighted the upregulation of ACTC1 and FDPS at D21,which were primarily associated with muscle structure development by gene cluster enrichment.Additionally,a noteworthy upregulation of MUSTN1,FOS and TGFB3 was spotted in broiler chickens at D42,which were involved in cell differentiation and muscle regeneration after injury,suggesting a regulatory role of muscle growth and repair.Conclusions This work provided a regulatory network of postnatal broiler chickens and revealed ACTC1 and MUSTN1 as the key responsible for muscle development and regeneration.Our findings highlight that rapid growth in broiler chickens triggers ongoing muscle damage and subsequent regeneration.These findings provide a foundation for future research to investigate the functional aspects of muscle deve
