A genetic linkage map of cotton was constructed with a newly developed molecular marker-SRAP (sequence-related amplified polymorphism) using a population consisting of 129 F2 individuals derived from the interspecific...A genetic linkage map of cotton was constructed with a newly developed molecular marker-SRAP (sequence-related amplified polymorphism) using a population consisting of 129 F2 individuals derived from the interspecific cross of Handan208 Pima90. A total of 136 primer pairs were used to detect polymorphisms between the two parents and 76 primer pairs with better polymorphisms were picked out to analyze the F2 population. 285 polymorphic bands were generated in total with an average of 3.75 polymorphic bands per pair of primers. The primer pair showing most polymorphic bands was the combination of me3 and em2, which produced 13 polymorphic bands. The 285 loci were used to construct linkage map with MAPMAKER/EXP3.0 and 237 loci were mapped at a LOD≥3.0 on 39 linkage groups. The total length of the map is 3030.7 cM, covering 65.4% of the whole cotton genome, and the average distance between adjacent markers is 12.79 cM. All the markers are distributed evenly among the linkage groups without clustering of loci. This is the first linkage map of cotton comprised of SRAP markers.展开更多
【目的】采用SSR标记构建2008年中国3大棉区8个棉花主产省份32份棉花主栽品种的DNA指纹图谱并进行遗传多样性分析。【方法】从214对候选引物中筛选出36对多态性高、稳定性好且在染色体上分布均匀的引物作为核心引物,构建棉花主栽品种DN...【目的】采用SSR标记构建2008年中国3大棉区8个棉花主产省份32份棉花主栽品种的DNA指纹图谱并进行遗传多样性分析。【方法】从214对候选引物中筛选出36对多态性高、稳定性好且在染色体上分布均匀的引物作为核心引物,构建棉花主栽品种DNA指纹图谱。【结果】36对SSR引物在32份材料中共扩增出142种多态性基因型,每对引物的基因型从2—11种不等,平均每对引物扩增出3.94种基因型。9对引物在10个品种上具有特征带型。最少采用5对引物进行组合鉴定即可将32个棉花品种完全区分开。NTSYS-pc V 2.10软件分析表明,长江流域棉区品种间遗传差异最大,新疆棉区次之,黄河流域棉区最小。常规品种的遗传基础窄于杂交陆地棉。【结论】核心引物组合法相比特征谱带法更适用于构建中国棉花主栽品种DNA指纹图谱,品种间的亲缘关系与地理来源有一定的相关性。展开更多
基金This work was supported by the National"863"High Technology Foundation(Grant Nos.2001AA211121 and 2002AA-211031)the National"948"Foundation(Grant No.201012).
文摘A genetic linkage map of cotton was constructed with a newly developed molecular marker-SRAP (sequence-related amplified polymorphism) using a population consisting of 129 F2 individuals derived from the interspecific cross of Handan208 Pima90. A total of 136 primer pairs were used to detect polymorphisms between the two parents and 76 primer pairs with better polymorphisms were picked out to analyze the F2 population. 285 polymorphic bands were generated in total with an average of 3.75 polymorphic bands per pair of primers. The primer pair showing most polymorphic bands was the combination of me3 and em2, which produced 13 polymorphic bands. The 285 loci were used to construct linkage map with MAPMAKER/EXP3.0 and 237 loci were mapped at a LOD≥3.0 on 39 linkage groups. The total length of the map is 3030.7 cM, covering 65.4% of the whole cotton genome, and the average distance between adjacent markers is 12.79 cM. All the markers are distributed evenly among the linkage groups without clustering of loci. This is the first linkage map of cotton comprised of SRAP markers.
文摘【目的】采用SSR标记构建2008年中国3大棉区8个棉花主产省份32份棉花主栽品种的DNA指纹图谱并进行遗传多样性分析。【方法】从214对候选引物中筛选出36对多态性高、稳定性好且在染色体上分布均匀的引物作为核心引物,构建棉花主栽品种DNA指纹图谱。【结果】36对SSR引物在32份材料中共扩增出142种多态性基因型,每对引物的基因型从2—11种不等,平均每对引物扩增出3.94种基因型。9对引物在10个品种上具有特征带型。最少采用5对引物进行组合鉴定即可将32个棉花品种完全区分开。NTSYS-pc V 2.10软件分析表明,长江流域棉区品种间遗传差异最大,新疆棉区次之,黄河流域棉区最小。常规品种的遗传基础窄于杂交陆地棉。【结论】核心引物组合法相比特征谱带法更适用于构建中国棉花主栽品种DNA指纹图谱,品种间的亲缘关系与地理来源有一定的相关性。
