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RNA病毒翻译调控元件——内部核糖体进入位点(IRES) 被引量:15
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作者 卢杰 张珈敏 +2 位作者 林美娟 曹旭 胡远扬 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2007年第7期513-518,共6页
真核生物大多数蛋白质合成采用了依赖帽子结构的翻译起始方式.但一组缺乏帽子结构的RNA病毒的蛋白质合成起始是依赖其5′端非翻译区(untranslated region,UTR)翻译调控的顺式作用元件———内部核糖体进入位点(internal ribosome entry ... 真核生物大多数蛋白质合成采用了依赖帽子结构的翻译起始方式.但一组缺乏帽子结构的RNA病毒的蛋白质合成起始是依赖其5′端非翻译区(untranslated region,UTR)翻译调控的顺式作用元件———内部核糖体进入位点(internal ribosome entry site,IRES).它们能够在一些反式作用因子的辅助下,招募核糖体小亚基到病毒mRNA的翻译起始位点.目前,依赖IRES元件翻译起始的RNA病毒在哺乳动物,无脊椎动物及植物中均有发现.因此,对RNA病毒IRES元件的深入研究,不仅有助于阐明相关疾病的发生机理,而且为工业应用和疾病治疗提供借鉴意义.本文对RNA病毒IRES元件发现、分类、结构与功能等作了综述. 展开更多
关键词 RNA病毒 内部核糖体进入位点(IRES) 翻译起始
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m RNA5′端不同位置的二级结构对原核生物翻译起始的影响 被引量:10
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作者 夏宇蕾 陈农安 陆长德 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2001年第1期29-34,共6页
一个 2 1 bp的序列插入 B50中的人 PCNA- Lac Z′融合蛋白 m RNA的 SD序列的上游 1 1 bpH ind 切点处 ,构成正、反向插入的两个重组质粒 B50 il、B50 i2 .通过计算机程序对 m RNA二级结构的模拟分析 ,B50 il的插入序列在翻译起始区 (TIR... 一个 2 1 bp的序列插入 B50中的人 PCNA- Lac Z′融合蛋白 m RNA的 SD序列的上游 1 1 bpH ind 切点处 ,构成正、反向插入的两个重组质粒 B50 il、B50 i2 .通过计算机程序对 m RNA二级结构的模拟分析 ,B50 il的插入序列在翻译起始区 (TIR)前形成一个发夹结构 ,但不影响 TIR的二级结构 ;B50 i2的插入序列在 TIR 5′端形成一个二级结构 ;而另一克隆 D1 3与 B50因 SD前后的 6个和 7个碱基序列的不同 ;使翻译起始区 TIR的 SD到 AUG附近的二级结构不相同 .实验测定的四者的β-半乳糖苷酶活性与计算机计算的解开 m RNA TIR的二级结构所需能量ΔE进行比较 ,其结果说明 m RNA TIR前面的二级结构对翻译起始无影响 ,而位于 TIR的 5′端的二级结构对翻译起始效率是有影响的 .不过 ,它与 m RNA TIR的 SD到 AUG的附近的二级结构对翻译起始效率的影响相比 ,TIR5′端二级结构的影响比较小 .同时 ,PCNA- Lac Z和 PCNA- Lac Z′两种融合蛋白的β-半乳糖苷酶活性也进行了比较 ,酶活性有差别 ,但不同质粒酶活性的比值仍相同 . 展开更多
关键词 翻译起始 二级结构 翻译起始区 MRNA 原核生物
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Structure and functions of the translation initiation factor eIF4E and its role in cancer development and treatment 被引量:5
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作者 Arianna Pisera Adele Campo Salvatore Campo 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2018年第1期13-24,共12页
In eukaryotic cells, protein synthesis is a complex and multi-step process that has several mechanisms to start the translation including cap-dependent and cap-independent initiation. The translation control of eukary... In eukaryotic cells, protein synthesis is a complex and multi-step process that has several mechanisms to start the translation including cap-dependent and cap-independent initiation. The translation control of eukaryotic gene expression occurs principally at the initiation step. In this context, it is critical that the eukaryotic translation initiation factor eIF4E bind to the 7-methylguanosine (m7G) cap present at the 5'- UTRs of most eukaryotic mRNAs. Combined with other initiation factors, elF4E mediates the mRNA recruitment on ribosomes to start the translation. Moreover, the eIF4E nuclear bodies are involved in the export of specific mRNAs from the nucleus to the cytoplasm. In this review, we focus on the elF4E structure and its physiological functions, and describe the role of eIF4E in cancer development and progression and the current therapeutic strategies to target eIF4E. 展开更多
关键词 elF4E factor translation initiation mRNA exportCancer
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真核翻译起始因子eIF3A导致的翻译起始异常和相关疾病(英文) 被引量:5
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作者 朱涛 高元峰 +5 位作者 李玲 王蕾云 尹继业 周宏灏 张伟 刘昭前 《中南大学学报(医学版)》 CAS CSCD 北大核心 2017年第10期1204-1211,共8页
真核生物翻译控制在细胞进程中对基因表达调控具有重要作用,能确保蛋白的迅速调节以维持细胞内稳态。真核翻译是一个多步骤的过程,包括起始、延伸、终止和核糖体循环,其中起始是限速步骤,受真核翻译起始因子(eukaryotic translation ini... 真核生物翻译控制在细胞进程中对基因表达调控具有重要作用,能确保蛋白的迅速调节以维持细胞内稳态。真核翻译是一个多步骤的过程,包括起始、延伸、终止和核糖体循环,其中起始是限速步骤,受真核翻译起始因子(eukaryotic translation initiation factors,eIFs)调控。翻译起始缺陷将导致一系列疾病。在所有eIFs中,eIF3是最大的同时知之较少的因子。eIF3A是eIF3因子的最大亚基,其异常一方面会导致肿瘤发生,另一方面将阻止肿瘤向更高级别恶性肿瘤进展。eIF3A表达变化和突变影响肿瘤患者对铂类化疗药物的反应。此外,eIF3A与纤维化病变相关,抑制eIF3A的试剂能延缓病变进展。eIF3A在肿瘤中的双重作用可能是其在肿瘤进展的不同阶段调节不同mRNAs翻译的结果,特定阶段不同mRNAs的编码产物发挥促癌或抑癌作用。 展开更多
关键词 翻译起始 真核翻译起始因子3A 癌症 纤维化 铂类药物化疗
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eIF4A在帽依赖和IRES介导的翻译起始中的作用
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作者 郭可盈 周杰 《生命科学》 CSCD 2024年第3期291-301,共11页
生物体内翻译起始机制分为两类:帽依赖性翻译起始和内部核糖体进入位点(internal ribosome entry sites,IRES)介导的翻译起始。真核生物的翻译起始为经典的帽依赖性翻译起始模型,而大多数正链RNA病毒选择依赖于IRES的翻译机制。真核翻... 生物体内翻译起始机制分为两类:帽依赖性翻译起始和内部核糖体进入位点(internal ribosome entry sites,IRES)介导的翻译起始。真核生物的翻译起始为经典的帽依赖性翻译起始模型,而大多数正链RNA病毒选择依赖于IRES的翻译机制。真核翻译起始因子4A(eukaryotic initiation factor 4A,eIF4A)是DEAD-box RNA解旋酶家族的成员,具有依赖于RNA的ATP酶活性和RNA解旋酶活性,而e IF4A具体的解旋机制至今仍不清晰。同时,eIF4A与其他翻译因子有着复杂而紧密的联系,在帽依赖性与IRES介导的翻译起始过程中扮演着至关重要的角色。本文主要对eIF4A的功能、结构以及eIF4A在帽依赖性与IRES介导的翻译起始过程中的机制作一综述。 展开更多
关键词 eIF4A IRES依赖性翻译 帽结构依赖性翻译 翻译起始
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HPV18间隔序列介导真核基因以双顺反子形式表达
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作者 张煜豪 孙小强 +3 位作者 鲍正好 李雨彤 刘佳艺 何红鹏 《天津科技大学学报》 CAS 2024年第4期9-14,25,共7页
HPV18是一种DNA病毒,其E6和E7基因可读框(ORF)相隔8个核苷酸,以双顺反子形式在宫颈癌细胞HeLa细胞中表达E6和E7蛋白。为探究此间隔序列是否在基因双顺反子表达中发挥关键作用,利用此序列构建2个双顺反子表达质粒,转染人胚胎肾细胞HEK293... HPV18是一种DNA病毒,其E6和E7基因可读框(ORF)相隔8个核苷酸,以双顺反子形式在宫颈癌细胞HeLa细胞中表达E6和E7蛋白。为探究此间隔序列是否在基因双顺反子表达中发挥关键作用,利用此序列构建2个双顺反子表达质粒,转染人胚胎肾细胞HEK293T细胞,检测上下游2个ORF表达水平。逆转录聚合酶链反应(RT-PCR)结果显示2个ORF同时转录,免疫印迹(Western blot)结果显示2个蛋白同时表达,荧光显微镜结果进一步显示红色荧光蛋白(RFP)和绿色荧光蛋白(GFP)共表达。以上结果证明HPV18 E6和E7基因间隔序列可在上游ORF翻译结束后重新启动下游ORF翻译。此现象在真核细胞中比较罕见,分子机制可能与核糖体重新结合有关,值得进一步探究。 展开更多
关键词 翻译起始 多顺反子 HPV 基因表达 核糖体结合序列 真核细胞
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pBV-IL-6重组质粒的构建及其在E.coli细胞中的超高表达 被引量:4
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作者 任启生 王嘉玺 +1 位作者 邹民吉 马贤凯 《中国免疫学杂志》 CAS CSCD 北大核心 1992年第3期133-136,共4页
本研究通过计算机分析设计、人工合成的寡核苷酸引物进行定点诱变和转译起始区优化,再经 PCR 扩增和体外重组,获得重组质粒 pBV-IL-6,转化大肠杆菌获得重组人白细胞介素6的工程菌 EcoliJM103/pBV-IL-6.结果,表达 IL-6占菌体总蛋白的71%.... 本研究通过计算机分析设计、人工合成的寡核苷酸引物进行定点诱变和转译起始区优化,再经 PCR 扩增和体外重组,获得重组质粒 pBV-IL-6,转化大肠杆菌获得重组人白细胞介素6的工程菌 EcoliJM103/pBV-IL-6.结果,表达 IL-6占菌体总蛋白的71%.经 IL-6依赖的小鼠杂交瘤细胞系7TDI 和^(?)H-TdR 掺入法测定表达产物粗提物的 IL-6生物活性为10~6U/L,经凝胶过滤纯化与复性之后 IL-6比活性为10^(?)U/mg.表达产物为缺失 N 端25个氨基酸的人白细胞介素6. 展开更多
关键词 白细胞介素6 转译起始 定点诱变
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Novel Evidence Suggests Hepatitis B Virus Surface Proteins Participate in Regulation of HBV Genome Replication 被引量:4
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作者 Jian Qiu Bo Qin +5 位作者 Simon Rayner Chun-chen Wu Rong-juan Pei Song Xu Yun Wang Xin-wen Chen 《Virologica Sinica》 SCIE CAS CSCD 2011年第2期131-138,共8页
Naturally occurring mutations in surface proteins of Hepatitis B virus(HBV) usually result in altered hepatitis B surface antigen(HBsAg) secretion efficiency.In the present study,we reported two conserved residues,M75... Naturally occurring mutations in surface proteins of Hepatitis B virus(HBV) usually result in altered hepatitis B surface antigen(HBsAg) secretion efficiency.In the present study,we reported two conserved residues,M75 and M103 with respect to HBsAg,mutations of which not only attenuated HBsAg secretion(M75 only),but also suppressed HBV genome replication without compromising the overlapping p-gene product.We also found M75 and M103 can initiate truncated surface protein(TSPs) synthesis upon over-expression of full-length surface proteins,which may possibly contribute to HBV genome replication.However,attempts to rescue replicationdefective HBV mutant by co-expression of TSPs initiated from M75 or M103 were unsuccessful,which indicated surface proteins rather than the putative TSPs were involved in regulation of HBV genome replication. 展开更多
关键词 Hepatitis B virus (HBV) HBSAG Truncated surface protein (TSPs) Site-directed mutagenesis Alternative translation initiation
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Mechanism and effect of stress granule formation in cancer and its potential roles in breast cancer therapy 被引量:4
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作者 Taobo Hu Wei Hou +1 位作者 Enhua Xiao Mengping Long 《Genes & Diseases》 SCIE 2022年第3期659-667,共9页
Stress granules are non-membranous cytoplasmic foci induced by various stress conditions.It is a protective strategy used by cells to suppress overall translation during stress.In cancer cells,it was thought that the ... Stress granules are non-membranous cytoplasmic foci induced by various stress conditions.It is a protective strategy used by cells to suppress overall translation during stress.In cancer cells,it was thought that the formation of stress granules could protect them from apoptosis and induces resistance towards anti-cancer drugs or radiation treatment which makes the stress granules a potential target for cancer treatment.However,most of our understanding of stress granules are still in the stage of molecular and cell biology,and a transitional gap for its actual effect on clinical settings remains.In this review,we summarize the mechanism and effect of stress granules formation in cancer and try to illuminate its potential applications in cancer therapy,using breast cancer as an example. 展开更多
关键词 APOPTOSIS Breast cancer Drug resistance Stress granules translation initiation
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Expression of p27Kip1, A Cell Cycle Repressor Protein with Dual Roles for Both Cancer Prevention and Promotion, Is Regulated Primarily at the Level of Unusual p27Kip1 mRNA—A Short Concept Proposal 被引量:2
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作者 Isao Eto 《American Journal of Molecular Biology》 2018年第3期186-193,共8页
The p27Kip1 is a cell cycle repressor protein that regulates primarily the cell cycle transition from G1 to S phase and hence the DNA replication is in the S phase and cell division in the M phase. Expression of p27Ki... The p27Kip1 is a cell cycle repressor protein that regulates primarily the cell cycle transition from G1 to S phase and hence the DNA replication is in the S phase and cell division in the M phase. Expression of p27Kip1 protein has dual roles for both cancer prevention and promotion. For example, numerous nutritional and chemopreventive anti-cancer agents specifically increase the expression of p27Kip1 protein without directly affecting the expression of any other cell cycle regulatory proteins. On the other hand, pro-cancer agents (like glucose, insulin and other growth factors frequently seen in obesity and/or diabetes) specifically decrease the expression of p27Kip1 protein without directly affecting the expression of any other cell cycle regulatory proteins. Unlike expression of any other cell cycle regulatory proteins, expression of p27Kip1 protein is very unusual. The mRNA of p27Kip1 has a very long and unusual 5’-untranslated region (from -575 to -1 in human). It appears that the 5’-untranslated region of p27Kip1 mRNA forms two alternative secondary structures. One increases the expression of p27Kip1 protein when anti-cancer agents are added and another decrease the expression of p27K1p1 when pro-cancer agents are added. For this short concept proposal, Dr. Albert Einstein’s “visualized thought experiments (German: Gedanken experiment)” were used as a fundamental tool for understanding how either anti- or pro-cancer agents bring the primary structure of the 5’-untranslated region of p27Kip1 mRNA into two alternative secondary structures, thereby either increasing or decreasing, respectively, the translation initiation of p27Kip1 protein. 展开更多
关键词 P27KIP1 Cell Cycle Repressor Protein CANCER Prevention Anti-Cancer AGENTS CANCER PROMOTION Pro-Cancer AGENTS P27KIP1 MRNA 5-Prime-Untranslated Region translation initiation 5-Prime Cap Upstream Open Reading Frame Internal Ribosome Entry Site
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Mechanisms mediating the effects of alcohol and HIV anti-retroviral agents on mTORC1,mTORC2 and protein synthesis in myocytes 被引量:2
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作者 Ly Q Hong-Brown Abid A Kazi Charles H Lang 《World Journal of Biological Chemistry》 CAS 2012年第6期110-120,共11页
Alcoholism and acquired immune deficiency syndrome are associated with severe muscle wasting.This impairment in nitrogen balance arises from increased protein degradation and a decreased rate of protein synthesis.The ... Alcoholism and acquired immune deficiency syndrome are associated with severe muscle wasting.This impairment in nitrogen balance arises from increased protein degradation and a decreased rate of protein synthesis.The regulation of protein synthesis is a complex process involving alterations in the phosphorylation state and protein-protein interaction of various components of the translation machinery and mammalian target of rapamycin(mTOR) complexes.This review describes mechanisms that regulate protein synthesis in cultured C2C12 myocytes following exposure to either alcohol or human immunodeficiency virus antiretroviral drugs.Particular attention is given to the upstream regulators of mTOR complexes and the downstream targets which play an important role in translation.Gaining a better understanding of these molecular mechanisms could have important implications for preventing changes in lean body mass in patients with catabolic conditions or illnesses. 展开更多
关键词 AMP-activated PROTEIN kinase/tuberous sclerosis complex 2/Ras homolog enriched in brain Rag GTPASES PHOSPHOLIPASE D MITOGEN-ACTIVATED PROTEIN KINASE translation initiation Elongation
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Valproate reduces retinal ganglion cell apoptosis in rats after optic nerve crush 被引量:2
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作者 Feng Pan Dan Hu +3 位作者 Li-Juan Sun Qian Bai Yu-Sheng Wang Xu Hou 《Neural Regeneration Research》 SCIE CAS CSCD 2023年第7期1607-1612,共6页
The retinal ganglion cells of the optic nerve have a limited capacity for self-repair after injury.Valproate is a histone deacetylase inhibitor and multitarget drug,which has been demonstrated to protect retinal neuro... The retinal ganglion cells of the optic nerve have a limited capacity for self-repair after injury.Valproate is a histone deacetylase inhibitor and multitarget drug,which has been demonstrated to protect retinal neurons.In this study,we established rat models of optic nerve-crush injury and injected valproate into the vitreous cavity immediately after modeling.We evaluated changes in the ultrastructure morphology of the endoplasmic reticulum of retinal ganglion cells over time via transmission electron microscope.Immunohistochemistry and western blot assay revealed that valproate upregulated the expression of the endoplasmic reticulum stress marker glucose-regulated protein 78 and downregulated the expression of transcription factor C/EBP homologous protein,phosphorylated eukaryotic translation initiation factor 2α,and caspase-12 in the endoplasmic reticulum of retinal ganglion cells.These findings suggest that valproate reduces apoptosis of retinal ganglion cells in the rat after optic nerve-crush injury by attenuating phosphorylated eukaryotic translation initiation factor 2α-C/EBP homologous protein signaling and caspase-12 activation during endoplasmic reticulum stress.These findings represent a newly discovered mechanism that regulates how valproate protects neurons. 展开更多
关键词 APOPTOSIS C/EBP homologous protein CASPASE-12 endoplasmic reticulum glucose-regulated protein 78 optic nerve crush phosphorylated eukaryotic translation initiation factor retinal ganglion cells unfolded protein response valproate
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mRNA5’端发卡结构与翻译的起始调控 被引量:2
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作者 王传铭 尚喜雨 《生物信息学》 2008年第3期135-137,141,共4页
mRNA的5’端大多存在各种由RNA自身折叠形成的发卡结构,这些结构对于核糖体识别mRNA翻译起始位点并与之准确结合往往具有十分重要的意义。简要综述了此类结构的基本特征以及它们在生物体内所起到的调控蛋白质翻译的作用。
关键词 MRNA 发夹结构 翻译起始 调控
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Higher Concentrations of Glucose or Insulin Increase the Risk of Various Types of Cancer in Obesity or Type 2 Diabetes by Decreasing the Expression of p27Kip1, a Cell Cycle Repressor Protein 被引量:1
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作者 Isao Eto 《American Journal of Molecular Biology》 2020年第1期1-11,共11页
Research Aims: Obesity and type 2 diabetes are known to be associated with increased risk of various types of cancer. However, the molecular biological mechanism of how the risk of cancer is increased in obesity or ty... Research Aims: Obesity and type 2 diabetes are known to be associated with increased risk of various types of cancer. However, the molecular biological mechanism of how the risk of cancer is increased in obesity or type 2 diabetes is not known. The aim this research is to investigate if the decreased expression of p27Kip1, a cell cycle repressor protein, plays a central role in this mechanism. Research Methods, Previous Studies and Theoretical Backgrounds: It is well known that the expression of p27Kip1 is increased by numerous nutritional or chemopreventive anti-cancer agents. But it has never been known that the expression of p27Kip1 could be decreased, rather than increased, and the risk of cancer could be increased, rather than decreased. This problem was solved recently and this new analytical method was used in this study. Results: 1) The expression of p27Kip1 was indeed significantly decreased in human obese type 2 diabetic individuals relative to the lean normal controls. 2) The expression of p27Kip1 was also significantly decreased in genetically obese rodents relative to the lean normal controls. Additionally, in obese rodents, the concentrations of glucose or insulin were significantly increased relative to the lean normal controls. 3) Using human cells cultured in vitro it was found that the increased concentrations of glucose or insulin decrease the expression of p27Kip1. Conclusions: These results suggest that higher concentrations of glucose or insulin increase the risk of various types of cancer in obesity or type 2 diabetes by decreasing the expression of p27Kip1. 展开更多
关键词 OBESITY Type 2 Diabetes CANCER P27KIP1 MRNA translation initiation 5’-Untranslated Region (5’UTR) 5’-End Cap of P27KIP1 MRNA Upstream Open Reading Frame (uORF) Internal RIBOSOME Entry Site (IRES)
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真核细胞蛋白质翻译起始研究进展 被引量:2
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作者 周培 杨力 +3 位作者 陈佳 李伯良 赵学明 张耀洲 《浙江工程学院学报》 2004年第4期312-315,共4页
在大量有关机制的研究基础上,针对真核蛋白质翻译起始,提出了核糖体沿mRNA滑动识别翻译起始位点的机制和核糖体从mRNA内部识别翻译起始位点的机制。
关键词 蛋白质翻译 真核细胞 研究进展 核蛋白质 核糖体 RNA 机制 起始 研究基础
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真核翻译起始因子4A研究进展与展望 被引量:2
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作者 周玉梅 祖从从 周建峰 《山东农业科学》 2014年第11期143-147,共5页
真核翻译起始因子4A(eIF4A)蛋白属于DEAD-box RNA解旋酶家族,具有RNA依赖的ATP酶活性和ATP依赖的RNA解旋酶活性。脊椎动物中已经鉴定出三种eIF4A:eIF4A1、eIF4A2和e IF4A3。除参与翻译起始,eIF4A家族成员在胚胎发育等多种生命过程中也... 真核翻译起始因子4A(eIF4A)蛋白属于DEAD-box RNA解旋酶家族,具有RNA依赖的ATP酶活性和ATP依赖的RNA解旋酶活性。脊椎动物中已经鉴定出三种eIF4A:eIF4A1、eIF4A2和e IF4A3。除参与翻译起始,eIF4A家族成员在胚胎发育等多种生命过程中也发挥着重要的作用。虽然三种eIF4A在序列上高度相似,但它们的作用不尽相同。eIF4A成员作用的独特性和多样化通常由相互作用的结合蛋白来调节。本文将eIF4A家族成员的最新研究进展,特别是e IF4A成员各自独特的作用作一综述。 展开更多
关键词 eIF4A 翻译起始 DEAD-box解旋酶 胚胎发育
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Detection of eukaryotic translation initiation factor 4E and its clinical significance in hepatocellular carcinoma 被引量:2
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作者 Xiao-Lin Wang Hong-Pei Cai +1 位作者 Jun-Hui Ge Xiao-Feng Su 《World Journal of Gastroenterology》 SCIE CAS CSCD 2012年第20期2540-2544,共5页
AIM:To study the expression of eukaryotic translation initiation factor 4E(eIF4E),which is closely correlated with malignant tumors,and its relationship to prognosis in hepatocellular carcinoma. METHODS:Western blotti... AIM:To study the expression of eukaryotic translation initiation factor 4E(eIF4E),which is closely correlated with malignant tumors,and its relationship to prognosis in hepatocellular carcinoma. METHODS:Western blotting was performed to quantify the elF4E protein expression in the normal human liver cell line L02 and the hepatoma cell lines Hep3B, HepG2,and Huh7.Forty-six hepatocellular carcinoma samples with complete clinical data were obtained from Changzheng Hospital during the period of December 2008 to July 2009.The expression of eIF4E in the tumor samples and their adjacent tissues were detected by immunohistochemistry.The relationship between the test results and hepatocellular carcinoma(HCC) prognosis was statistically analysed by using a COX proportional hazard model. RESULTS:Western blotting analysis showed that there were distinct eIF4E protein bands in all three of the hepatoma cell lines.In particular,the HepG2 cell line had the highest level of eIF4E protein expression.The L02 cell group had a low eIF4E expression.Immunohistochemical assay showed that there were 32 cases in which the tumour tissue expression was higher than their adjacent tissues,accounting for 69.57%.There were also 14 cases in which the tumour tissue expression was lower or no significant difference was found, accounting for 30.43%.COX proportional hazards model analysis showed that HCC prognosis was related to the depth of invasion,the overexpression of eIF4E and p53, possibly as independent HCC prognostic predictors. CONCLUSION:In summary,eIF4E expression is associated with liver cancer,and patients with high eIF4E expression levels have a higher risk of recurrence. 展开更多
关键词 Hepatocellular carcinoma Eukaryotic translation initiation factor 4E Western blotting IMMUNOHISTOCHEMISTRY PROGNOSIS
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5′-tiRNA-Gln inhibits hepatocellular carcinoma progression by repressing translation through the interaction with eukaryotic initiation factor 4A-I 被引量:1
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作者 Chengdong Wu Dekai Liu +4 位作者 Lufei Zhang Jingjie Wang Yuan Ding Zhongquan Sun Weilin Wang 《Frontiers of Medicine》 SCIE CSCD 2023年第3期476-492,共17页
tRNA-derived small RNAs(tsRNAs)are novel non-coding RNAs that are involved in the occurrence and progression of diverse diseases.However,their exact presence and function in hepatocellular carcinoma(HCC)remain unclear... tRNA-derived small RNAs(tsRNAs)are novel non-coding RNAs that are involved in the occurrence and progression of diverse diseases.However,their exact presence and function in hepatocellular carcinoma(HCC)remain unclear.Here,differentially expressed tsRNAs in HCC were profiled.A novel tsRNA,tRNAGln-TTG derived 5′-tiRNA-Gln,is significantly downregulated,and its expression level is correlated with progression in patients.In HCC cells,5′-tiRNA-Gln overexpression impaired the proliferation,migration,and invasion in vitro and in vivo,while 5′-tiRNA-Gln knockdown yielded opposite results.5′-tiRNA-Gln exerted its function by binding eukaryotic initiation factor 4A-I(EIF4A1),which unwinds complex RNA secondary structures during translation initiation,causing the partial inhibition of translation.The suppressed downregulated proteins include ARAF,MEK1/2 and STAT3,causing the impaired signaling pathway related to HCC progression.Furthermore,based on the construction of a mutant 5′-tiRNA-Gln,the sequence of forming intramolecular G-quadruplex structure is crucial for 5′-tiRNA-Gln to strongly bind EIF4A1 and repress translation.Clinically,5′-tiRNA-Gln expression level is negatively correlated with ARAF,MEK1/2,and STAT3 in HCC tissues.Collectively,these findings reveal that 5′-tiRNA-Gln interacts with EIF4A1 to reduce related mRNA binding through the intramolecular Gquadruplex structure,and this process partially inhibits translation and HCC progression. 展开更多
关键词 EIF4A1 G-QUADRUPLEX hepatocellular carcinoma tRNA-derived small RNA translation initiation
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Feature Selection for the Prediction of Translation Initiation Sites 被引量:1
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作者 Guo-Liang Li Tze-Yun Leong 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2005年第2期73-83,共11页
Translation initiation sites (TISs) are important signals in cDNA sequences. In many previous attempts to predict TISs in cDNA sequences, three major factors affect the prediction performance: the nature of the cDNA s... Translation initiation sites (TISs) are important signals in cDNA sequences. In many previous attempts to predict TISs in cDNA sequences, three major factors affect the prediction performance: the nature of the cDNA sequence sets, the rel- evant features selected, and the classification methods used. In this paper, we examine different approaches to select and integrate relevant features for TIS pre- diction. The top selected significant features include the features from the position weight matrix and the propensity matrix, the number of nucleotide C in the se- quence downstream ATG, the number of downstream stop codons, the number of upstream ATGs, and the number of some amino acids, such as amino acids A and D. With the numerical data generated from these features, different classifi- cation methods, including decision tree, naive Bayes, and support vector machine, were applied to three independent sequence sets. The identified significant features were found to be biologically meaningful, while the experiments showed promising results. 展开更多
关键词 translation initiation site prediction CLASSIFICATION feature selection
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Eukaryotic Translation Initiation Factors Shape RNA Viruses Resistance in Plants 被引量:2
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作者 Jannat Shopan Xiaolong Lv +2 位作者 Zhongyuan Hu Mingfang Zhang Jinghua Yang 《Horticultural Plant Journal》 2020年第2期81-88,共8页
Viruses are representative of a global threat to agricultural production. Genetic resistance is the preferred strategy for the control of viral infection and against loss of crop yield. Viral protein synthesis require... Viruses are representative of a global threat to agricultural production. Genetic resistance is the preferred strategy for the control of viral infection and against loss of crop yield. Viral protein synthesis requires host cellular factors for translating their viral RNAs, and for regulating their replication and cell to cell systemic movement. Therefore, the viruses are dependent on cellular translation factors. Mutations in the gene encoding eIF4E and eIF4G or their isoforms, eIFiso4 E, eIFiso4 G and eIF2Bβ have been mapped as a source of plant potyvirus while other genus of plant virus recessive resistance genes in many species are originated from these loci. Some of other plant translation factors, such as eIF3,eIF4 A-like helicases, eEF1A and eEF1B, which are required in interacting with viral RNAs and regulating various aspects of the infection cycle,have also been identified. Here, we summarized the mechanisms utilized by RNA viruses of eukaryotic plants and the essential roles of e IFs in virus infection. Moreover, we discussed the potential of e IFs as a target gene in the development of genetic resistance to viruses for crop improvement. This review highlighted newly revealed examples of abnormal translational strategies and provided insights into natural host resistance mechanisms that have been linked to 3 cap-independent translational enhancer activity. 展开更多
关键词 EUKARYOTIC translation initiation factor genome EDITING 3 cap-independent translationAL ENHANCER virus RESISTANCE
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