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Very Low-Level Heteroplasmy mtDNA Variations Are Inherited in Humans 被引量:5
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作者 Yan Guo Chung-I Li +4 位作者 Quanhu Sheng Jeanette F.Winther Qiuyin Cai John D.Boice Yu Shyr 《Journal of Genetics and Genomics》 SCIE CAS CSCD 2013年第12期607-615,共9页
Little is known about the inheritance of very low heteroplasmy mitochondria DNA (mtDNA) variations. Even with the development of new next-generation sequencing methods, the practical lower limit of measured heteropl... Little is known about the inheritance of very low heteroplasmy mitochondria DNA (mtDNA) variations. Even with the development of new next-generation sequencing methods, the practical lower limit of measured heteroplasmy is still about 1% due to the inherent noise level of the sequencing. In this study, we sequenced the mitochondrial genome of 44 individuals using Illumina high-throughput sequencing technology and obtained high-coverage mitochondria sequencing data. Our study population contains many mother-offspring pairs. This unique study design allows us to bypass the usual heteroplasmy limitation by analyzing the correlation of mutation levels at each position in the mtDNA sequence between maternally related pairs and non-related pairs. The study showed that very low heteroplasmy variants, down to almost 0.1%, are inherited maternally and that this inheritance begins to decrease at about 0.5%, cor- resnondin to abottleneck of about 200 mtDNA. 展开更多
关键词 Maternal inheritance Next-generation sequencing high-depth sequencing HETEROPLASMY mtDNA mutations BOTTLENECK
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靶向捕获高深度测序及转录组测序在儿童急性B淋巴细胞白血病中的应用 被引量:1
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作者 张伟娜 王鹏飞 +1 位作者 甘文婷 何映谊 《白血病.淋巴瘤》 CAS 2023年第3期147-152,共6页
目的探讨靶向捕获高深度测序(Panel-seq)及转录组测序(RNA-seq)与传统检测方法在儿童初发急性B淋巴细胞白血病(B-ALL)细胞及分子遗传学分型中的差异及意义。方法回顾性分析2020年9月至2021年12月在广州市妇女儿童医疗中心新诊断为B-ALL... 目的探讨靶向捕获高深度测序(Panel-seq)及转录组测序(RNA-seq)与传统检测方法在儿童初发急性B淋巴细胞白血病(B-ALL)细胞及分子遗传学分型中的差异及意义。方法回顾性分析2020年9月至2021年12月在广州市妇女儿童医疗中心新诊断为B-ALL的152例患儿临床资料。患儿除接受包括核型分析、荧光原位杂交以及43种融合基因定量筛查的传统细胞及分子遗传学方法检测外,还进行Panel-seq及RNA-seq检测。Panel-seq覆盖血液系统肿瘤常见变异的600多个基因,同时分析融合基因及基因突变;RNA-seq分析融合基因、基因突变及基因表达情况,推测染色体水平的拷贝数变异,并结合基因表达谱聚类和拷贝数变异预测高二倍体亚型。分析比较各检测方法遗传学分型结果。结果152例患儿中,男性93例,女性59例,中位年龄4.0岁(0.8~13.0岁),中位原始细胞比例0.855(0.215~0.965)。152例患儿中,传统检测方法鉴定出4例(2.6%)BCR-ABL1、2例(1.3%)CRLF2基因相关融合、27例(17.8%)ETV6-RUNX1、1例(0.7%)iAMP21、5例(3.3%)MLL重排、8例(5.3%)TCF3-PBX1以及22例(14.5%)高二倍体核型;Panel-seq鉴定出4例(2.6%)BCR-ABL1、2例(1.3%)CRLF2基因相关融合、27例(17.8%)ETV6-RUNX1、3例(2.0%)MEF2D基因相关融合、1例(0.7%)MEIS1-FOXO1、5例(3.3%)MLL重排、5例(3.3%)PAX5基因相关融合、8例(5.3%)TCF3-PBX1、4例(2.6%)ZNF384基因相关融合和2例(1.3%)IKZF1 N159Y突变。1例MLL重排患儿因样本质量问题未进行RNA-seq检测,其余151例患儿中,共检出1例(0.7%)ACIN1-NUTM1、4例(2.6%)BCR-ABL1、3例(2.0%)CRLF2基因相关融合、8例(5.3%)DUX4基因相关融合、27例(17.9%)ETV6-RUNX1、3例(2.0%)MEF2D基因相关融合、1例(0.7%)MEIS1-FOXO1、4例(2.6%)MLL重排、5例(3.3%)PAX5基因相关融合、1例(0.7%)ZMIZ1-ABL1、8例(5.3%)TCF3-PBX1、4例(2.6%)ZNF384基因相关融合及61例(40.4%)高二倍体亚型和2例(1.3%)IKZF1 N159Y突变;RNA-seq对融合基因及高二倍体核型检出有明显优� 展开更多
关键词 前体B细胞淋巴母细胞白血病淋巴瘤 儿童 序列分析 细胞遗传学分析 靶向捕获高深度测序 转录组测序
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