研究了基因序列分析中的DNA序列相似性重复片段的查找问题.在对重复片段的相似性衡量进行分析之后,基于海明距离提出了新的相似度衡量标准模式相似度和片段相似度,并在此基础上提出了一个新的相似性重复片段的定义SATR(segment-similari...研究了基因序列分析中的DNA序列相似性重复片段的查找问题.在对重复片段的相似性衡量进行分析之后,基于海明距离提出了新的相似度衡量标准模式相似度和片段相似度,并在此基础上提出了一个新的相似性重复片段的定义SATR(segment-similarity based approximate tandem repeats).在进行SATR的查找时,采用了一个轻量级的索引后继数组,并设计出在后继数组上进行SATR查找的算法.实验评估和性能分析表明,基于后继数组的SATR查找算法在查找结果和查找时间上都要优于其他同类方法.展开更多
Several methods including molecular mechanics, molecular dynamics, ONIOM that combines quantum chemistry with molecular mechanics and standard quantum chemistry are used to study the configuration and electron structu...Several methods including molecular mechanics, molecular dynamics, ONIOM that combines quantum chemistry with molecular mechanics and standard quantum chemistry are used to study the configuration and electron structures of an adduct of the DNA segment d(ATACATG*G*TACATA)·d(TATGTACCATGTAT) with cis-[Pt(NH3)(2-Picoline)]2+. The investigation shows that the configuration optimized by ONIOM is similar to that determined by NMR. Strong chemical bonds between Pt of the complex and two N7s of neighboring guanines in the DNA duplex and hydrogen bond between the NH3 of the complex and O6 of a nearby guanine have a large impact on the configuration of the adduct. Chemical bonds, the aforementioned hydrogen bond, and the interaction between a methyl of the complex and a methyl of the base in close proximity are critical for the complex to specifically recognize DNA.展开更多
Breast cancer is one of the most common cancers in the world,survival rates of breast cancer are rising as screening and treatment improve.Many new technologies applied in the biomedical domain have been born for rapi...Breast cancer is one of the most common cancers in the world,survival rates of breast cancer are rising as screening and treatment improve.Many new technologies applied in the biomedical domain have been born for rapid diagnosis and treatment.In this work,visualization cell microarray chip with threedimensional(3 D)embedded cell scaffold for cell diagnosis and treatment was designed.DNA segment,targeting on breast cancer cells SK-BR-3,were modified with camptothecin and used as model drug.Cell microarray chip system successfully control the diffusion of small molecules and locally introduced the compounds into cells.3 D embedded cell scaffold in the cell array chip afforded an environment with continuous medium supplementary and help controlling the diffusion of small molecules drugs.By cell microarray chip system,SK-BR-3 was targeted screening and killing in one step.Cell microarray chip system can achieve accurate,rapid diagnosis and target treatment of breast cancer cells SK-BR-3 and have a potential to develop to be an effective and accurate drug screen method for evaluating the drug effect of the booming chemicals.展开更多
A backcross recombinant inbred line population consisting of 202 lines was developed from Xieqingzao B//Xieqingzao B / Dongxiang wild rice. The population was assayed with DNA markers and phenotyped on planthopper res...A backcross recombinant inbred line population consisting of 202 lines was developed from Xieqingzao B//Xieqingzao B / Dongxiang wild rice. The population was assayed with DNA markers and phenotyped on planthopper resistance and yield traits. A linkage map consisting of 119 DNA markers and spanned for 1188 cM over the 12 rice chromosomes was constructed. Thirty-two chromosomal segment substitution lines were selected based on the percentage of Xieqingzao B allele at marker loci. These lines are of great potential for gene mapping and alien gene introgression.展开更多
文摘研究了基因序列分析中的DNA序列相似性重复片段的查找问题.在对重复片段的相似性衡量进行分析之后,基于海明距离提出了新的相似度衡量标准模式相似度和片段相似度,并在此基础上提出了一个新的相似性重复片段的定义SATR(segment-similarity based approximate tandem repeats).在进行SATR的查找时,采用了一个轻量级的索引后继数组,并设计出在后继数组上进行SATR查找的算法.实验评估和性能分析表明,基于后继数组的SATR查找算法在查找结果和查找时间上都要优于其他同类方法.
基金This work was supported by the National Natural Science Foundation of China(Grant Nos.20271009,20231010,29992590-1)the Major State Basic Research Development Programs(Grant No.G2000078101)+1 种基金the Key Research Projection of the Foundation for University Key Teacherthe Scientific Research Foundation for the Returned Overseas Chinese Scholars by the Ministry of Education.
文摘Several methods including molecular mechanics, molecular dynamics, ONIOM that combines quantum chemistry with molecular mechanics and standard quantum chemistry are used to study the configuration and electron structures of an adduct of the DNA segment d(ATACATG*G*TACATA)·d(TATGTACCATGTAT) with cis-[Pt(NH3)(2-Picoline)]2+. The investigation shows that the configuration optimized by ONIOM is similar to that determined by NMR. Strong chemical bonds between Pt of the complex and two N7s of neighboring guanines in the DNA duplex and hydrogen bond between the NH3 of the complex and O6 of a nearby guanine have a large impact on the configuration of the adduct. Chemical bonds, the aforementioned hydrogen bond, and the interaction between a methyl of the complex and a methyl of the base in close proximity are critical for the complex to specifically recognize DNA.
基金supported by the National Natural Science Foundation of China(Nos.11204033,51773093)the Natural Science Foundation of Jiangsu Province(No.BK20141397)+4 种基金the Research Fund for the Doctoral Program of Higher Education of China(No.20120092120042)the CMA L’OREAL CHINA SKIN GRANT 2015(No.S2015121421)the Open Research Fund of State Key Laboratory of Natural Medicines,China Pharmaceutical University(No.SKLNMKF201803)Southeast University and Nanjing Medical University Cooperation Project(No.2242018K3DN14)Open Research Fund of State Key Laboratory of Bioelectronics,Southeast University
文摘Breast cancer is one of the most common cancers in the world,survival rates of breast cancer are rising as screening and treatment improve.Many new technologies applied in the biomedical domain have been born for rapid diagnosis and treatment.In this work,visualization cell microarray chip with threedimensional(3 D)embedded cell scaffold for cell diagnosis and treatment was designed.DNA segment,targeting on breast cancer cells SK-BR-3,were modified with camptothecin and used as model drug.Cell microarray chip system successfully control the diffusion of small molecules and locally introduced the compounds into cells.3 D embedded cell scaffold in the cell array chip afforded an environment with continuous medium supplementary and help controlling the diffusion of small molecules drugs.By cell microarray chip system,SK-BR-3 was targeted screening and killing in one step.Cell microarray chip system can achieve accurate,rapid diagnosis and target treatment of breast cancer cells SK-BR-3 and have a potential to develop to be an effective and accurate drug screen method for evaluating the drug effect of the booming chemicals.
文摘A backcross recombinant inbred line population consisting of 202 lines was developed from Xieqingzao B//Xieqingzao B / Dongxiang wild rice. The population was assayed with DNA markers and phenotyped on planthopper resistance and yield traits. A linkage map consisting of 119 DNA markers and spanned for 1188 cM over the 12 rice chromosomes was constructed. Thirty-two chromosomal segment substitution lines were selected based on the percentage of Xieqingzao B allele at marker loci. These lines are of great potential for gene mapping and alien gene introgression.
