BIOLOG微平板法作为一种方便快速的微生物检验技术,已广泛应用于环境微生物检测,微生物生态研究等方面,发挥着越来越重要的作用。该方法可以获得关于微生物群落碳源利用能力的大量数据,反映出关于微生物活性的丰富信息。然而大量的数据...BIOLOG微平板法作为一种方便快速的微生物检验技术,已广泛应用于环境微生物检测,微生物生态研究等方面,发挥着越来越重要的作用。该方法可以获得关于微生物群落碳源利用能力的大量数据,反映出关于微生物活性的丰富信息。然而大量的数据也对解释和分析提出了挑战,分析了应用于BIOLOG产生数据的统计分析方法,对常用的AWCD值计算,多样性指数计算,主成分分析(PCA),聚类分析,相关、回归等方法深入探讨,阐述各自的功能、不足以及在应用中容易出现的问题。另外也对一些不常见的方法,如非参数多元分析(Non-Parametric version of MANOVA/Permutation version of MANOVA)、动力学参数分析、多元回归树、典范对应分析等也进行了讨论。通过对不同方法应用目标和原理的分析论述了各自优缺点,对微生物研究中基于BIOLOG方法数据分析的选择应用提供参考。展开更多
Colorectal cancer(CRC)is a very heterogeneous disease that is caused by the interaction of genetic and environmental factors.CRC develops through a gradual accumulation of genetic and epigenetic changes,leading to the...Colorectal cancer(CRC)is a very heterogeneous disease that is caused by the interaction of genetic and environmental factors.CRC develops through a gradual accumulation of genetic and epigenetic changes,leading to the transformation of normal colonic mucosa into invasive cancer.CRC is one of the most prevalent and incident cancers worldwide,as well as one of the most deadly.Approximately 1235108 people are diagnosed annually with CRC,and 609051 die from CRC annually.The World Health Organization estimates an increase of77%in the number of newly diagnosed cases of CRCand an increase of 80%in deaths from CRC by 2030.The incidence of CRC can benefit from different strategies depending on its stage:health promotion through health education campaigns(when the disease is not yet present),the implementation of screening programs(for detection of the disease in its early stages),and the development of nearly personalized treatments according to both patient characteristics(age,sex)and the cancer itself(gene expression).Although there are different strategies for screening and although the number of such strategies is increasing due to the potential of emerging technologies in molecular marker application,not all strategies meet the criteria required for screening tests in population programs;the three most accepted tests are the fecal occult blood test(FOBT),colonoscopy and sigmoidoscopy.FOBT is the most used method for CRC screening worldwide and is also the primary choice in most population-based screening programs in Europe.Due to its non-invasive nature and low cost,it is one of the most accepted techniques by population.CRC is a very heterogeneous disease,and with a few exceptions(APC,p53,KRAS),most of the genes involved in CRC are observed in a small percentage of cases.The design of genetic and epigenetic marker panels that are able to provide maximum coverage in the diagnosis of colorectal neoplasia seems a reasonable strategy.In recent years,the use of DNA,RNA and protein markers in different biological samples 展开更多
文摘BIOLOG微平板法作为一种方便快速的微生物检验技术,已广泛应用于环境微生物检测,微生物生态研究等方面,发挥着越来越重要的作用。该方法可以获得关于微生物群落碳源利用能力的大量数据,反映出关于微生物活性的丰富信息。然而大量的数据也对解释和分析提出了挑战,分析了应用于BIOLOG产生数据的统计分析方法,对常用的AWCD值计算,多样性指数计算,主成分分析(PCA),聚类分析,相关、回归等方法深入探讨,阐述各自的功能、不足以及在应用中容易出现的问题。另外也对一些不常见的方法,如非参数多元分析(Non-Parametric version of MANOVA/Permutation version of MANOVA)、动力学参数分析、多元回归树、典范对应分析等也进行了讨论。通过对不同方法应用目标和原理的分析论述了各自优缺点,对微生物研究中基于BIOLOG方法数据分析的选择应用提供参考。
基金Supported by Partially funded by the Carlos Ⅲ Health Institute No.PI11/01593
文摘Colorectal cancer(CRC)is a very heterogeneous disease that is caused by the interaction of genetic and environmental factors.CRC develops through a gradual accumulation of genetic and epigenetic changes,leading to the transformation of normal colonic mucosa into invasive cancer.CRC is one of the most prevalent and incident cancers worldwide,as well as one of the most deadly.Approximately 1235108 people are diagnosed annually with CRC,and 609051 die from CRC annually.The World Health Organization estimates an increase of77%in the number of newly diagnosed cases of CRCand an increase of 80%in deaths from CRC by 2030.The incidence of CRC can benefit from different strategies depending on its stage:health promotion through health education campaigns(when the disease is not yet present),the implementation of screening programs(for detection of the disease in its early stages),and the development of nearly personalized treatments according to both patient characteristics(age,sex)and the cancer itself(gene expression).Although there are different strategies for screening and although the number of such strategies is increasing due to the potential of emerging technologies in molecular marker application,not all strategies meet the criteria required for screening tests in population programs;the three most accepted tests are the fecal occult blood test(FOBT),colonoscopy and sigmoidoscopy.FOBT is the most used method for CRC screening worldwide and is also the primary choice in most population-based screening programs in Europe.Due to its non-invasive nature and low cost,it is one of the most accepted techniques by population.CRC is a very heterogeneous disease,and with a few exceptions(APC,p53,KRAS),most of the genes involved in CRC are observed in a small percentage of cases.The design of genetic and epigenetic marker panels that are able to provide maximum coverage in the diagnosis of colorectal neoplasia seems a reasonable strategy.In recent years,the use of DNA,RNA and protein markers in different biological samples
