Identification of kiwifruit germplasm materials is the basis of protecting and utilizing these resources.However,identifying Actinidia arguta varieties based on morphology is difficult,especially for non-specialists.I...Identification of kiwifruit germplasm materials is the basis of protecting and utilizing these resources.However,identifying Actinidia arguta varieties based on morphology is difficult,especially for non-specialists.In this study,we collected 180 specimens comprising 60 varieties of three species(A.arguta,A.kolomikta,and A.polygama)from the Northeast of China.The emphasis of our study was on the feasibility of identifying A.arguta varieties.Here,we used common analysis methods(genetic distance,phylogenetic analysis and the DNA barcoding gap)and SNPs analysis to evaluate the discriminatory power of different DNA barcoding markers.The results revealed that common methods were insufficient to identify A.arguta varieties but SNPs analysis based on DNA barcoden was the potential method for identifying A.arguta varieties.Besides,Our study agree that DNA barcoding could be used to analysis the evaluation genetic relationship of the Actinidia plants.展开更多
Fruit of Lonicera caerulea L. is a rich source of phenolic compounds such as phenolic acids as well as anthocyanins,proanthocyanidins and other flavonoids,which display potential health-promoting effects. However,its ...Fruit of Lonicera caerulea L. is a rich source of phenolic compounds such as phenolic acids as well as anthocyanins,proanthocyanidins and other flavonoids,which display potential health-promoting effects. However,its genetics and genomic information is limited. Transcriptome and digital gene expression( DGE) profiles of fruit at four different development stages were compared. Related genes with anthocyanin biosynthesis were compared using real-time quantitative PCR( qRT-PCR). RNA-Seq generated 6. 26-Gb clean reads,which was then de novo assembled into 45,656 UniG enes with a mean length 837 bp. A total of 7 928 unigenes were annotated into 32 known metabolic or signaling pathways in which a few primary,intermediate,and secondary metabolic pathways are directly related to fruit quality. The result of DGE and qRT-PCR indicates that UFGT( comp20132_c0) may play a key role in honeysuckle coloration. This provides a reference for the study of complicated metabolism in non-model perennial species.展开更多
基金Supported by the Jilin Scientific and Technological Development Program(20170203006NY)Central Public-interest Scientific Institution Basal Research Fund(1610342016019)
文摘Identification of kiwifruit germplasm materials is the basis of protecting and utilizing these resources.However,identifying Actinidia arguta varieties based on morphology is difficult,especially for non-specialists.In this study,we collected 180 specimens comprising 60 varieties of three species(A.arguta,A.kolomikta,and A.polygama)from the Northeast of China.The emphasis of our study was on the feasibility of identifying A.arguta varieties.Here,we used common analysis methods(genetic distance,phylogenetic analysis and the DNA barcoding gap)and SNPs analysis to evaluate the discriminatory power of different DNA barcoding markers.The results revealed that common methods were insufficient to identify A.arguta varieties but SNPs analysis based on DNA barcoden was the potential method for identifying A.arguta varieties.Besides,Our study agree that DNA barcoding could be used to analysis the evaluation genetic relationship of the Actinidia plants.
基金Supported by Agricultural Science and Technology Innovation Project of China
文摘Fruit of Lonicera caerulea L. is a rich source of phenolic compounds such as phenolic acids as well as anthocyanins,proanthocyanidins and other flavonoids,which display potential health-promoting effects. However,its genetics and genomic information is limited. Transcriptome and digital gene expression( DGE) profiles of fruit at four different development stages were compared. Related genes with anthocyanin biosynthesis were compared using real-time quantitative PCR( qRT-PCR). RNA-Seq generated 6. 26-Gb clean reads,which was then de novo assembled into 45,656 UniG enes with a mean length 837 bp. A total of 7 928 unigenes were annotated into 32 known metabolic or signaling pathways in which a few primary,intermediate,and secondary metabolic pathways are directly related to fruit quality. The result of DGE and qRT-PCR indicates that UFGT( comp20132_c0) may play a key role in honeysuckle coloration. This provides a reference for the study of complicated metabolism in non-model perennial species.
