Elevated salinity imposes osmotic and ion toxicity stresses on living cells and requires a multitude of responses in order to enable plant survival. Building on earlier work profiling transcript levels in rice （Oryza...Elevated salinity imposes osmotic and ion toxicity stresses on living cells and requires a multitude of responses in order to enable plant survival. Building on earlier work profiling transcript levels in rice （Oryza sativa） shoots of FL478, a salt-tolerant indica recombinant inbred line, and IR29, a salt-sensitive cultivar, transcript levels were compared in roots of these two accessions as well as in the roots of two additional salt-tolerant indica genotypes, the landrace Pokkali and the recombinant inbred line IR63731. The aim of this study was to compare transcripts in the sensitive and the tolerant lines in order to identify genes likely to be involved in plant salinity tolerance, rather than in responses to salinity perse. Transcript profiles of several gene families with known links to salinity tolerance are described （e.g. HKTs, NHXs）. The putative function of a set of genes identified through their salt responsiveness, transcript levels, and/or chro- mosomal location （i.e. underneath QTLs for salinity tolerance） is also discussed. Finally, the parental origin of the Saltol region in FL478 is further investigated. Overall, the dataset presented appears to be robust and it seems likely that this system could provide a reliable strategy for the discovery of novel genes involved in salinity tolerance.展开更多
The introduction of alleles into commercial crop breeding pipelines is both time consuming and costly.Two technologies that are disrupting traditional breeding processes are doubled haploid(DH)breeding and genome edit...The introduction of alleles into commercial crop breeding pipelines is both time consuming and costly.Two technologies that are disrupting traditional breeding processes are doubled haploid(DH)breeding and genome editing(GE).Recently,these techniques were combined into a GE trait delivery system called HI-Edit(Haploid Inducer-Edit).In HI-Edit,the pollen of a haploid inducer line is reprogrammed to deliver GE traits to any variety,obviating recurrent selection.For HI-Edit to operate at scale,an efficient transformable HI line is needed,but most maize varieties are recalcitrant to transformation,and haploid inducers are especially difficult to transform given their aberrant reproductive behaviors.Leveraging marker assisted selection and a three-tiered testing scheme,we report the development of new Iodent and Stiff Stalk maize germplasm that are transformable,have high haploid induction rates,and exhibit a robust,genetically-dominant anthocyanin native trait that may be used for rapid haploid identification.We show that transformation of these elite‘‘HI-Edit”lines is enhanced using the BABYBOOM and WUSCHEL morphogenetic factors.Finally,we evaluate the HI-Edit performance of one of the lines against both Stiff Stalk and non-Stiff Stalk testers.The strategy and results of this study should facilitate the development of commercially scalable HI-Edit systems in diverse crops.展开更多
Effects of sub-millimeter scale heterogeneity in chemical and microbial distributions on atrazine degradation were examined using Pseudomonas sp. strain ADP introduced into soil at a population mimicking atrazine-adap...Effects of sub-millimeter scale heterogeneity in chemical and microbial distributions on atrazine degradation were examined using Pseudomonas sp. strain ADP introduced into soil at a population mimicking atrazine-adapted soils (~2000 cells/g), and employing a range of soil water pressures (?100, ?300, ?500 kPa). Heterogeneous cell distribution was employed in all treatments whereas uniformity of distribution was a variable for atrazine introduction. Two methods of initially distributing atrazine in soil were examined. Proximally-applied atrazine (PAA) was intended to yield elevated atrazine concentrations in the vicinity of the degraders. Dispersed atrazine (DA) was introduced to distribute the chemical uniformly as compared to the distribution of degraders. Both rate and extent of degradation were greater than PAA, regardless of water content, presumably due to proximity of atrazine to degraders. Biodegradation decreased with decreasing water content for both application methods, attributed to decreases in atrazine’s effective diffusion. Mineralization of nearly 100% of DA in soils receiving a heterogeneous inoculum with a greater cell density (~107 cells/g) indicates that biodegradation was limited by the distance atrazine had to diffuse. Results support the hypothesis that enhanced populations of atrazine degraders, as reported elsewhere for atrazine-adapted soils, though heterogeneously distributed, may overcome bioavailability limitations.展开更多
The UK Met Office Unified Model（UM） is employed by many weather forecasting agencies around the globe. This model is designed to run across spatial and time scales and known to produce skillful predictions for large...The UK Met Office Unified Model（UM） is employed by many weather forecasting agencies around the globe. This model is designed to run across spatial and time scales and known to produce skillful predictions for large-scale weather systems. However, the model has only recently begun running operationally at horizontal grid spacings of ～1.5 km [e.g.,at the UK Met Office and the Korea Meteorological Administration（KMA）]. As its microphysics scheme was originally designed and tuned for large-scale precipitation systems, we investigate the performance of UM microphysics to determine potential inherent biases or weaknesses. Two rainfall cases from the KMA forecasting system are considered in this study： a Changma（quasi-stationary） front, and Typhoon Sanba（2012）. The UM output is compared to polarimetric radar observations in terms of simulated polarimetric radar variables. Results show that the UM generally underpredicts median reflectivity in stratiform rain, producing high reflectivity cores and precipitation gaps between them. This is partially due to the diagnostic rain intercept parameter formulation used in the one-moment microphysics scheme. Model drop size is generally both underand overpredicted compared to observations. UM frozen hydrometeors favor generic ice（crystals and snow） rather than graupel, which is reasonable for Changma and typhoon cases. The model performed best with the typhoon case in terms of simulated precipitation coverage.展开更多
文摘Elevated salinity imposes osmotic and ion toxicity stresses on living cells and requires a multitude of responses in order to enable plant survival. Building on earlier work profiling transcript levels in rice （Oryza sativa） shoots of FL478, a salt-tolerant indica recombinant inbred line, and IR29, a salt-sensitive cultivar, transcript levels were compared in roots of these two accessions as well as in the roots of two additional salt-tolerant indica genotypes, the landrace Pokkali and the recombinant inbred line IR63731. The aim of this study was to compare transcripts in the sensitive and the tolerant lines in order to identify genes likely to be involved in plant salinity tolerance, rather than in responses to salinity perse. Transcript profiles of several gene families with known links to salinity tolerance are described （e.g. HKTs, NHXs）. The putative function of a set of genes identified through their salt responsiveness, transcript levels, and/or chro- mosomal location （i.e. underneath QTLs for salinity tolerance） is also discussed. Finally, the parental origin of the Saltol region in FL478 is further investigated. Overall, the dataset presented appears to be robust and it seems likely that this system could provide a reliable strategy for the discovery of novel genes involved in salinity tolerance.
文摘The introduction of alleles into commercial crop breeding pipelines is both time consuming and costly.Two technologies that are disrupting traditional breeding processes are doubled haploid(DH)breeding and genome editing(GE).Recently,these techniques were combined into a GE trait delivery system called HI-Edit(Haploid Inducer-Edit).In HI-Edit,the pollen of a haploid inducer line is reprogrammed to deliver GE traits to any variety,obviating recurrent selection.For HI-Edit to operate at scale,an efficient transformable HI line is needed,but most maize varieties are recalcitrant to transformation,and haploid inducers are especially difficult to transform given their aberrant reproductive behaviors.Leveraging marker assisted selection and a three-tiered testing scheme,we report the development of new Iodent and Stiff Stalk maize germplasm that are transformable,have high haploid induction rates,and exhibit a robust,genetically-dominant anthocyanin native trait that may be used for rapid haploid identification.We show that transformation of these elite‘‘HI-Edit”lines is enhanced using the BABYBOOM and WUSCHEL morphogenetic factors.Finally,we evaluate the HI-Edit performance of one of the lines against both Stiff Stalk and non-Stiff Stalk testers.The strategy and results of this study should facilitate the development of commercially scalable HI-Edit systems in diverse crops.
文摘Effects of sub-millimeter scale heterogeneity in chemical and microbial distributions on atrazine degradation were examined using Pseudomonas sp. strain ADP introduced into soil at a population mimicking atrazine-adapted soils (~2000 cells/g), and employing a range of soil water pressures (?100, ?300, ?500 kPa). Heterogeneous cell distribution was employed in all treatments whereas uniformity of distribution was a variable for atrazine introduction. Two methods of initially distributing atrazine in soil were examined. Proximally-applied atrazine (PAA) was intended to yield elevated atrazine concentrations in the vicinity of the degraders. Dispersed atrazine (DA) was introduced to distribute the chemical uniformly as compared to the distribution of degraders. Both rate and extent of degradation were greater than PAA, regardless of water content, presumably due to proximity of atrazine to degraders. Biodegradation decreased with decreasing water content for both application methods, attributed to decreases in atrazine’s effective diffusion. Mineralization of nearly 100% of DA in soils receiving a heterogeneous inoculum with a greater cell density (~107 cells/g) indicates that biodegradation was limited by the distance atrazine had to diffuse. Results support the hypothesis that enhanced populations of atrazine degraders, as reported elsewhere for atrazine-adapted soils, though heterogeneously distributed, may overcome bioavailability limitations.
基金supported by a research grant of “Development of a Polarimetric Radar Data Simulator for Local Forecasting Model (Ⅱ)” by the KMAsupport was provided by a NOAA Warn-on-Forecast grant (Grant No. NA16OAR4320115)a National Science Foundation grant (Grant No. AGS-1261776)
文摘The UK Met Office Unified Model（UM） is employed by many weather forecasting agencies around the globe. This model is designed to run across spatial and time scales and known to produce skillful predictions for large-scale weather systems. However, the model has only recently begun running operationally at horizontal grid spacings of ～1.5 km [e.g.,at the UK Met Office and the Korea Meteorological Administration（KMA）]. As its microphysics scheme was originally designed and tuned for large-scale precipitation systems, we investigate the performance of UM microphysics to determine potential inherent biases or weaknesses. Two rainfall cases from the KMA forecasting system are considered in this study： a Changma（quasi-stationary） front, and Typhoon Sanba（2012）. The UM output is compared to polarimetric radar observations in terms of simulated polarimetric radar variables. Results show that the UM generally underpredicts median reflectivity in stratiform rain, producing high reflectivity cores and precipitation gaps between them. This is partially due to the diagnostic rain intercept parameter formulation used in the one-moment microphysics scheme. Model drop size is generally both underand overpredicted compared to observations. UM frozen hydrometeors favor generic ice（crystals and snow） rather than graupel, which is reasonable for Changma and typhoon cases. The model performed best with the typhoon case in terms of simulated precipitation coverage.
