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A Novel QTL qTGW3 Encodes the GSK3/ SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice 被引量:59
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作者 Zejun Hu Sun-Jie Lu +13 位作者 Mei-Jing Wang haohua He Le Sun Hongru Wang Xue-Huan Liu Ling Jiang Jing-Liang sun Xiaoyun Xin Wei Kong Chengcai Chu Hong-Wei Xue Jinshui Yang Xiaojin Luo Jian-Xiang Liu 《Molecular Plant》 SCIE CAS CSCD 2018年第5期736-749,共14页
Grain size and shape are important determinants of grain weight and yield in rice. Here, we report a new major quantitative trait locus (QTL), qTGW3, that controls grain size and weight in rice. This locus, qTGW3, e... Grain size and shape are important determinants of grain weight and yield in rice. Here, we report a new major quantitative trait locus (QTL), qTGW3, that controls grain size and weight in rice. This locus, qTGW3, encodes OsSK41 (also known as OsGSK5), a member of the GLYCOGEN SYNTHASE KINASE 3/SHAGGY-like family. Rice near-isogenic lines carrying the loss-of-function allele of OsSK41 have increased grain length and weight. We demonstrate that OsSK41 interacts with and phosphorylates AUXIN RESPONSE FACTOR 4 (OsARF4). Co-expression of OsSK41 with OsARF4 increases the accumulation of OsARF4 in rice protoplasts. Loss of function of OsARF4 results in larger rice grains. RNA-sequencing analysis suggests that OsARF4 and OsSK41 repress the expression of a common set of downstream genes, including some auxin-responsive genes, during rice grain development. The loss-of-function form of OsSK41 at qTGW3 represents a rare allele that has not been extensively utilized in rice breeding. Suppression of OsSK41 function by either targeted gene editing or QTL pyramiding enhances rice grain size and weight. Thus, our study reveals the important role of OsSK41 in rice grain development and provides new candidate genes for genetic improvement of grain yield in rice and perhaps in other cereal crops. 展开更多
关键词 QTL mapping GSK3-like family protein OsGSK5 OsARF4 grain size and weight Oryza sativa
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A Kelch Motif-Containing Serine/Threonine Protein Phosphatase Determines the Large Grain QTL Trait in Rice 被引量:45
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作者 Zejun Hu haohua He +6 位作者 Shiyong Zhang Fan Sun Xiaoyun Xin Wenxiang Wang Xi Qian Jingshui Yang Xiaojin Luo 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2012年第12期979-990,共12页
A thorough understanding of the genetic basis of rice grain traits is critical for the improvement of rice (Oryza sativa L.) varieties. In this study, we generated an F2 population by crossing the large-grain japoni... A thorough understanding of the genetic basis of rice grain traits is critical for the improvement of rice (Oryza sativa L.) varieties. In this study, we generated an F2 population by crossing the large-grain japonica cultivar CW23 with Peiai 64 (PA64), an elite indica small-grain cultivar. Using QTL analysis, 17 QTLs for five grain traits were detected on four different chromosomes. Eight of the QTLs were newly-identified in this study. In particular, qGL3-1, a newly-identified grain length QTL with the highest LOD value and largest phenotypic variation, was fine-mapped to the 17 kb region of chromosome 3. A serine/threonine protein phosphatase gene encoding a repeat domain containing two Kelch motifs was identified as the unique candidate gene corresponding to this QTL. A comparison of PA64 and CW23 sequences revealed a single nucleotide substitution (C→A) at position 1092 in exon 10, resulting in replacement of Asp (D) in PA64 with Glu (E) in CW23 for the 364th amino acid. This variation is located at the D position of the conserved sequence motif AVLDT of the Kelch repeat. Genetic analysis of a near-isogenic line (NIL) for qGL3-1 revealed that the allele qGL3-1 from CW23 has an additive or partly dominant effect, and is suitable for use in molecular marker-assisted selection. 展开更多
关键词 Grain shape QTL mapping QTL fine mapping RICE serine/threonine protein phosphatase.
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Progress on the total synthesis of natural products in China:From 2006 to 2010 被引量:8
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作者 CHEN Jie WANG AiE +1 位作者 HUO haohua HUANG PeiQiang 《Science China Chemistry》 SCIE EI CAS 2012年第7期1175-1212,共38页
This paper summarizes the progress on the total syntheses riod from 2006 to 2010. The overview focuses on the first of natural products accomplished in rnainland China during the petotal synthesis of natural products ... This paper summarizes the progress on the total syntheses riod from 2006 to 2010. The overview focuses on the first of natural products accomplished in rnainland China during the petotal synthesis of natural products of contemporary interest includ- ing alkaloids, cyclopeptides and cyclic depsipeptides, macrolides, terpenoids and steroids, saponins and glycosides. The development of novel synthetic strategies and methodologies, and application of new selective synthetic methods in the total syntheses of natural products are included as well. 展开更多
关键词 natural products total synthesis REVIEW China's Mainland
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Intravoxel incoherent motion and dynamic contrast-enhanced MRI for assessing abnormalities of brucellosis spondylitis without conventional MRI changes
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作者 WANG haohua ZHAO Pengfei QIAO Pengfei 《中国医学影像技术》 CSCD 北大核心 2024年第8期1226-1230,共5页
Objective To observe the value of intravoxel incoherent motion(IVIM)and dynamic contrast-enhanced MRI(DCE-MRI)for assessing abnormalities of brucellosis spondylitis(BS)without conventional MRI changes.Methods Data of ... Objective To observe the value of intravoxel incoherent motion(IVIM)and dynamic contrast-enhanced MRI(DCE-MRI)for assessing abnormalities of brucellosis spondylitis(BS)without conventional MRI changes.Methods Data of 36 brucellosis patients with definite spinal lesions displayed on conventional MRI(BS 1 group),14 cases without brucellosis infection nor abnormal spinal signals on MRI(control group)and 36 brucellosis patients without definite spinal lesions on conventional MRI(BS 2 group)were retrospectively analyzed.The values of IVIM parameters,including perfusion fraction(f),pure water diffusion coefficient(D)and pseudo-diffusion coefficient(D*),also of DCE-MRI parameters,including time-intensity curve(TIC)type,volume transport constant(K trans),the rate constant(K ep)and volume fraction of extravascular extracellular space per unit tissue volume(V e)were compared among groups.Univariate and multivariate logistic regression were used to screen independent factors for discriminating BS 1 and BS 2.Receiver operating characteristic curves were drawn,and the areas under the curve(AUC)were calculated to evaluate the efficiency of the above parameters for discriminating BS 1 and BS 2.Results Among IVIM parameters,compared with control group,D*values decreased but D values increased in BS 1 group,while D*values increased in BS 2 group(all adjusted P<0.05).Compared with BS 2 group,BS 1 group had higher values of f and D and lower D*(all adjusted P<0.05).In BS 1 group,the TIC types were predominantly typeⅠ(23/36,63.89%),which were wholly or predominantly typeⅢin BS 2 group and control group,and of the former was significantly different with latter 2(both adjusted P<0.05).Compared with control group,K trans increased progressively in both BS 1 and BS 2 groups(both adjusted P<0.05).BS 1 group had lower K ep and higher V e than BS 2 and control groups(all adjusted P<0.05).Among univariate logistic regression models,the model including only f had lower capability for discriminating BS 1 and BS 2(AUC=0.759)than those incl 展开更多
关键词 BRUCELLOSIS SPONDYLITIS early diagnosis magnetic resonance imaging
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Natural variation of an autophagy-family gene among rice subspecies affects grain size and weight
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作者 Shiying Huang Peng Wang +10 位作者 Caijing Li Qingwen Zhou Tao Huang Yicong Cai Qin Cheng Hui Wang Qi Zhong Zhihao Chen Liping Chen haohua He Jianmin Bian 《The Crop Journal》 SCIE CSCD 2024年第1期121-132,共12页
Elucidating the genetic basis of natural variation in grain size and weight among rice varieties can help breeders develop high-yielding varieties.We identified a novel gene,GW3a(Grain Weight 3a)(LOC_Os03g27350),that ... Elucidating the genetic basis of natural variation in grain size and weight among rice varieties can help breeders develop high-yielding varieties.We identified a novel gene,GW3a(Grain Weight 3a)(LOC_Os03g27350),that affects rice grain size and weight.gw3a mutants showed higher total starch content and dry matter accumulation than the wild type(WT),Nipponbare,suggesting that GW3a negatively regulates grain size and weight.Moreover,our study found that GW3a interacted with OsATG8 by cleaving it,suggesting that GW3a may be involved in the assembly of autophagosomes and starch degradation in plants.The haplotype analysis of GW3a showed functional differences between indica and japonica rice.Taken together,we conclude that GW3a is expressed in the autophagosome pathway regulating starch metabolism in rice,affecting yield-related traits,such as grain size,grain weight and thousand grain weight(TGW).Our findings also shed new light on autophagy-mediated yield trait regulation,proposing a possible strategy for the genetic improvement of high-yield germplasm in rice. 展开更多
关键词 Grain size GW3a AUTOPHAGY Starch content
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Improving flight performance of UAVs by ice shape modulation
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作者 Jiajun ZHANG Xuecheng LIU +5 位作者 Hua LIANG Like XIE Biao WEI haohua ZONG Yun WU Yinghong Li 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2024年第8期49-62,共14页
Aircraft icing poses a great threat to flight safety.In response to the characteristics of high-power consumption,large volume,and heavy weight of traditional anti-/de-icing technologies,the concept of ice shape modul... Aircraft icing poses a great threat to flight safety.In response to the characteristics of high-power consumption,large volume,and heavy weight of traditional anti-/de-icing technologies,the concept of ice shape modulation is proposed,which is called ice tolerant flight.Firstly,the flight performance of Unmanned Aerial Vehicle(UAV)was compared in three states:no ice,full ice,and modulated ice through flight tests.It was found that ice shape modulation has a significant improvement effect on the aerodynamic performance of aircraft under icing conditions.Under the three modulated ice shape conditions in this experiment,the lift coefficient of the UAV under different ice shape modulation conditions increased by 18%–33%,and the stalling angle was delayed by 3°-5°.Subsequently,the pressure distribution,streamlines in the flow field,and detached vortex distribution of the UAV model in these three states were obtained through numerical simulation,to study the mechanism of ice shape modulation on the aerodynamic performance of aircraft.The simulation found that the reason for the improvement of the wings effect after ice shape modulation is that the modulated area forms a leading-edge protrusion structure similar to a vortex generator.This structure prolongs the mixed flow region on the wings surface and reduces the trend of flow separation,which plays a role in increasing lift and reducing drag for UAVs under icing conditions.Finally,a reverse reachable set that can be used for unexpected state recovery is used as the definition of flight safety boundaries,and an aircraft dynamics model is established to obtain flight safety boundaries for different states.Research has found that the flight safety boundary of the UAV in a no ice state is greater than that in a modulated ice state,and the safety boundary in a modulated ice state is greater than that in a full ice state.Compared with the full ice state,the flight safety boundary after modulation has expanded by 27.0%.The scheme of ice shape modulation can provide a ba 展开更多
关键词 Ice shape modulation Aerodynamic performance Reachable set Flight safety UAV
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Genetic Analysis and Fine Mapping of a Novel Semidominant Dwarfing Gene LB4D in Rice 被引量:6
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作者 Fei Liang Xiaoyun Xin +6 位作者 Zejun Hu Jiandi Xu Gang Wei Xiaoyin Qian Jinshui Yang haohua He Xiaojin Luo 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2011年第4期312-323,共12页
A dwarf mutant,designated LB4D,was obtained among the progeny of backcrosses to a wild rice introgression line.Genetic analysis of LB4D indicated that the dwarf phenotype was controlled by a single semidominant dwarfi... A dwarf mutant,designated LB4D,was obtained among the progeny of backcrosses to a wild rice introgression line.Genetic analysis of LB4D indicated that the dwarf phenotype was controlled by a single semidominant dwarfing gene,which was named LB4D.The mutants were categorized as dn-type dwarf mutants according to the pattern of internode reduction.In addition,gibberellin(GA) response tests showed that LB4D plants were neither deficient nor insensitive to GA.This study found that tiller formation by LB4D plants was decreased by 40%compared with the wild type,in contrast to other dominant dwarf mutants that have been identified,indicating that a different dwarfing mechanism might be involved in the LB4D dominant mutant.The reduction of plant height in F1 plants ranged from 27.9%to 38.1%in different genetic backgrounds,showing that LB4D exerted a stronger dominant dwarfing effect. Using large F2 and F3 populations derived from a cross between heterozygous LB4D and the japonica cultivar Nipponbare,the LB4D gene was localized to a 46 kb region between the markers Indel 4 and Indel G on the short arm of chromosome 11,and four predicted genes were identified as candidates in the target region. 展开更多
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Nonlinear optical imaging by detection with optical parametric amplification(invited paper) 被引量:1
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作者 Yi Sun haohua Tu Stephen A.Boppart 《Journal of Innovative Optical Health Sciences》 SCIE EI CAS CSCD 2023年第1期5-14,共10页
Nonlinear optical imaging is a versatile tool that has been proven to be exceptionally useful in various research fields.However,due to the use of photomultiplier tubes(PMTs),the wide application of nonlinear optical ... Nonlinear optical imaging is a versatile tool that has been proven to be exceptionally useful in various research fields.However,due to the use of photomultiplier tubes(PMTs),the wide application of nonlinear optical imaging is limited by the incapability of imaging under am-bient light.In this paper,we propose and demonstrate a new optical imaging detection method based on optical parametric amplification(OPA).As a nonlinear optical process,OPA in-trinsically rejects ambient light photons by coherence gating.Periodical poled lithium niobate(PPLN)crystals are used in this study as the media for OPA.Compared to bulk nonlinear optical crystals,PPLN crystals support the generation of OPA signal with lower pump power.Therefore,this characteristic of PPLN crystals is particularly beneficial when using high-repetition-rate lasers,which facilitate high-speed optical signal detection,such as in spec-troscopy and imaging.A PPLN-based OPA system was built to amplify the emitted imaging signal from second harmonic generation(SHG)and coherent anti-Stokes Raman scattering(CARS)microscopy imaging,and the amplified optical signal was strong enough to be detected by a biased photodiode under ordinary room light conditions.With OPA detection,ambient-light-on SHG and CARS imaging becomes possible,and achieves a similar result as PMT detection under strictly dark environments.These results demonstrate that OPA can be used as a substitute for PMTs in nonlinear optical imaging to adapt it to various applications with complex.light ing conditions. 展开更多
关键词 Nonlinear optical microscopy optical parametric amplification optical detection
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Adhesive anastomosis for organ transplantation 被引量:4
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作者 Kang Liu Hang Yang +17 位作者 Gaobo Huang Aihua Shi Qiang Lu Shanpei Wang Wei Qiao haohua Wang Mengyun Ke Hongfan Ding Tao Li Yanchao Zhang Jiawei Yu Bingyi Ren Rongfeng Wang Kailing Wang Hui Feng Zhigang Suo Jingda Tang Yi Lv 《Bioactive Materials》 SCIE 2022年第7期260-268,共9页
The recent development of tough tissue adhesives has stimulated intense interests among material scientists and medical doctors.However,these adhesives have seldom been tested in clinically demanding surgeries.Here we... The recent development of tough tissue adhesives has stimulated intense interests among material scientists and medical doctors.However,these adhesives have seldom been tested in clinically demanding surgeries.Here we demonstrate adhesive anastomosis in organ transplantation.Anastomosis is commonly conducted by dense sutures and takes a long time,during which all the vessels are occluded.Prolonged occlusion may damage organs and even cause death.We formulate a tough,biocompatible,bioabsorbable adhesive that can sustain tissue tension and pressurized flow.We expose the endothelial surface of vessels onto a gasket,press two endothelial surfaces to the adhesive using a pair of magnetic rings,and reopen the bloodstream immediately.The time for adhesive anastomosis is shortened compared to the time for sutured anastomosis.We have achieved adhesive anastomosis of a great vein in transplanting the liver of a pig.After the surgery,the adhesive is absorbed,the vein heals,and the pig lives for over one month. 展开更多
关键词 MAGNET HYDROGEL ADHESIVE ANASTOMOSIS Liver transplantation
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Minimizing airfoil drag at low angles of attack with DBD-based turbulent drag reduction methods 被引量:1
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作者 Zhi SU haohua ZONG +5 位作者 Hua LIANG Jun LI Like XIE Xuecheng LIU Weiliang KONG Borui ZHENG 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2023年第4期104-119,共16页
Dielectric Barrier Discharge(DBD)based turbulent drag reduction methods are used to reduce the total drag on a NACA 0012 airfoil at low angels of attack.The interaction of DBD with turbulent boundary layer was investi... Dielectric Barrier Discharge(DBD)based turbulent drag reduction methods are used to reduce the total drag on a NACA 0012 airfoil at low angels of attack.The interaction of DBD with turbulent boundary layer was investigated,based on which the drag reduction experiments were conducted.The results show that unidirectional steady discharge is more effective than oscillating discharge in terms of drag reduction,while steady impinging discharge fails to finish the mission(i.e.drag increase).In the best scenario,a maximum relative drag reduction as high as 64%is achieved at the freestream velocity of 5 m/s,and a drag reduction of 13.7%keeps existing at the freestream velocity of 20 m/s.For unidirectional discharge,the jet velocity ratio and the dimensionless actuator spacing are the two key parameters affecting the effectiveness.The drag reduction magnitude varies inversely with the dimensionless spacing,and a threshold value of the dimensionless actuator spac-ing of 540(approximately five times of the low-speed streak spacing)exists,above which the drag increases.When the jet velocity ratio smaller than 0.05,marginal drag variation is observed.In con-trast,when the jet velocity ratio larger than 0.05,the experimental data bifurcates,one into the drag increase zone and the other into the drag reduction zone,depending on the value of dimensionless actuator spacing.In both zones,the drag variation magnitude increases with the jet velocity ratio.The total drag reduction can be divided into the reduction in pressure drag and turbulent friction drag,as well as the increase in friction drag brought by transition promotion.The reduction in tur-bulent friction drag plays an important role in the total drag reduction. 展开更多
关键词 Dielectric barrier discharge Dimensionless scaling Plasma actuator Turbulent friction drag WAKE
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Improving aircraft aerodynamic performance with bionic wing obtained by ice shape modulation 被引量:1
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作者 Like XIE Hua LIANG +4 位作者 haohua ZONG Yun WU Yinghong LI Zhi SU Xuecheng LIU 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2023年第2期76-86,共11页
For Unmanned Aerial Vehicles(UAVs)with limited electrical power to achieve effectively anti-/de-icing at the leading edge of the wing,a strategy of ice shape modulation was proposed.Isolated simulated ice shape pieces... For Unmanned Aerial Vehicles(UAVs)with limited electrical power to achieve effectively anti-/de-icing at the leading edge of the wing,a strategy of ice shape modulation was proposed.Isolated simulated ice shape pieces printed by 3D printing technology are mounted on a NACA0012 finite wing model,and its lift/drag coefficients and suction-side velocity fields are measured by the six-component force balance and the Particle Imaging Velocimetry(PIV),respectively.The ratio of the spanwise length of a single ice shape piece to chord length and the spanwise length of the non-icing area between the two adjacent single ice shape pieces are defined as dimensionless ice shape length(w/c)and dimensionless modulation ratio(w/λ),respectively.The results indicate that for a fixed w/λ,the wing lift coefficient first increases and then drops with increasing w/c,and a peak value exists when w/c is between 0.1 and 0.2.The lower the w/λis,the higher the wing lift coefficient will be.The periodical variation of the flow separation area along the spanwise direction is attributed on the one hand to the acceleration effect of the flow field in the non-icing area which reduces the separation area,and on the other hand to the cross-flow caused by the streamwise vortices from the non-icing area to the icing area which promotes the mixing of the flow field(similar to vortex generators).The obtained modulation law is verified through flight tests and provides guidance for the use of ice shape modulation scheme for UAVs that cannot be completely anti-/deicing under severe weather conditions. 展开更多
关键词 Dimensionless ice shape length Dimensionless modulation ratio Ice shape modulation NACA0012 finite wing Particle imaging velocimetry(PIV) Unmanned aerial vehicles(UAVs)
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Geometrical and electrical optimization of NS-SDBD streamwise plasma heat knife for aircraft anti-icing 被引量:1
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作者 Zhi SU Hua LIANG +5 位作者 haohua ZONG Jun LI Xu FANG Biao WEI Jie CHEN Weiliang KONG 《Chinese Journal of Aeronautics》 SCIE EI CAS CSCD 2023年第2期87-99,共13页
Ice accretion on aircraft encountering supercooled water droplets in clouds poses great risks to flight performance and safety.With the aim of optimizing the newly developed streamwise plasma heat knife method for ant... Ice accretion on aircraft encountering supercooled water droplets in clouds poses great risks to flight performance and safety.With the aim of optimizing the newly developed streamwise plasma heat knife method for anti-icing,a parametric investigation is carried out in this work.The influence of the detailed voltage profile on the heating effects of a Surface Dielectric Barrier Discharge driven by Nanosecond Pulses(NS-SDBD)is investigated,and a comparison of the antiicing performance among different configurations of streamwise plasma heat knife is made.The results show that columnar high-temperature regions produced by a multi-streamer discharge appear at small pulse rise time,but become diffuse as the pulse rise time increases.An optimal pulse rise time exists to provide a wide range and high value of temperature,which is found to be 150 ns for the setup in the present study.The influence of the pulse fall time is much weaker than that of the rise time.The range and value of the temperature decrease with increasing pulse fall time.A greater pulse width is found to improve the heating effect by increasing the discharge power.When a spanwise electrode is placed connecting the streamwise electrodes of the streamwise plasma heat knife at the airfoil leading edge,the anti-icing performance becomes poorer,whereas good performance is achieved when the spanwise electrode is at the edge of the streamwise electrodes.Based on this,a three-level configuration of the plasma heat knife is proposed,and its anti-icing performance is found to be much better than that of the original configuration. 展开更多
关键词 Airfoil icing mitigation Dielectric barrier discharge Nanosecond pulse Voltage profile PLASMA
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Geographical distribution of Aspergillus flavus in peanut harvest period in China
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作者 Xiaohan Liu Jiayun Fu +8 位作者 Mingbo Wen haohua Gu Pingping Ji Xiaofeng Yue Xiaoqian Tang Meijuan Liang Yang Zhou Qi Zhang Peiwu Li 《Oil Crop Science》 CSCD 2023年第2期127-132,共6页
In order to grasp the distribution of Aspergillus flavus in the soil of peanut production areas in China,A.flavus biomarkers were tested on 555 soil samples from 37 sampling points in 17 provinces,peanut fields in fou... In order to grasp the distribution of Aspergillus flavus in the soil of peanut production areas in China,A.flavus biomarkers were tested on 555 soil samples from 37 sampling points in 17 provinces,peanut fields in four agroecological zones(Southern area,Yangtze River Basin,Northern area,Northeast area).The results showed that(1)the cultivation amount of A.flavus per gram of soil in the Yangtze River Basin is 1.30 times that of the southern area,1.56 times that of the northern area,and 6.20 times that of the northeast area,with obvious regional characteristics.(2)In the Yangtze River basin,the change of longitude in the east-west direction has no direct impact on the cultivation amount of A.flavus per gram of soil.(3)In the east coast,the A.flavus cultivated per gram of soil increased first and then decreased with the increase of latitude from south to north.(4)A.flavus can be isolated in the soil samples above 1000 m.Field pollution is an important source of aflatoxin contamination in peanut.The study on the distribution of A.flavus in soil in China could provide theoretical support for the early warning and prevention and control measures of aflatoxin contamination in peanut. 展开更多
关键词 Agroecological zones PEANUT Aspergillus flavus DISTRIBUTION Aflatoxin contamination
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Nucleophilic Radicals as Hydrogen Atom Abstractors in C(sp3)-H Functionalization Reactions
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作者 Tao Li Jian Li haohua Huo 《Chinese Journal of Chemistry》 SCIE CAS CSCD 2023年第5期544-547,共4页
Hydrogen atom transfer(HAT)is an elementary mechanistic step in organic synthesis.The photoredox-catalyzed HAT has transformed organic synthesis by enabling the activation and subsequent cross-coupling of traditionall... Hydrogen atom transfer(HAT)is an elementary mechanistic step in organic synthesis.The photoredox-catalyzed HAT has transformed organic synthesis by enabling the activation and subsequent cross-coupling of traditionally inert yet ubiquitous C(sp^(3))-H bonds. 展开更多
关键词 RADICALS Hydrogen atom transfer(HAT) C(sp^(3))-H functionalization Polarity matching Photocatalysis
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A novel multimodal prediction model based on DNA methylation biomarkers and low-dose computed tomography images for identifying early-stage lung cancer
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作者 Jing Zhang haohua Yao +7 位作者 Chunliu Lai Xue Sun Xiujuan Yang Shurong Li Yubiao Guo Junhang Luo Zhihua Wen Kejing Tang 《Chinese Journal of Cancer Research》 SCIE CAS CSCD 2023年第5期511-525,共15页
Objective:DNA methylation alterations are early events in carcinogenesis and immune signalling in lung cancer.This study aimed to develop a model based on short stature homeobox 2 gene (SHOX2)/prostaglandin E receptor... Objective:DNA methylation alterations are early events in carcinogenesis and immune signalling in lung cancer.This study aimed to develop a model based on short stature homeobox 2 gene (SHOX2)/prostaglandin E receptor 4gene (PTGER4) DNA methylation in plasma,appearance subtype of pulmonary nodules (PNs) and low-dose computed tomography (LDCT) images to distinguish early-stage lung cancers.Methods:We developed a multimodal prediction model with a training set of 257 individuals.The performance of the multimodal prediction model was further validated in an independent validation set of 42 subjects.In addition,we explored the association between SHOX2/PTGER4 DNA methylation and driver gene mutations in lung cancer based on data from The Cancer Genome Atlas (TCGA) portal.Results:There were significant differences between the early-stage lung cancers and benign groups in the methylation levels.The area under a receiver operator characteristic curve (AUC) of SHOX2 in patients with solid nodules,mixed ground-glass opacity nodules and pure ground-glass opacity nodules were 0.693,0.497 and 0.864,respectively,while the AUCs of PTGER4 were 0.559,0.739 and 0.619,respectively.With the highest AUC of0.894,the novel multimodal prediction model outperformed the Mayo Clinic model (0.519) and LDCT-based deep learning model (0.842) in the independent validation set.Database analysis demonstrated that patients with SHOX2/PTGER4 DNA hypermethylation were enriched in TP53 mutations.Conclusions:The present multimodal prediction model could more efficiently distinguish early-stage lung cancer from benign PNs.A prognostic index based on DNA methylation and lung cancer driver gene alterations may separate the patients into groups with good or poor prognosis. 展开更多
关键词 Pulmonary nodules susceptible loci serum tumor biomarkers polygenic risk score diagnosis
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Intron Retention Fine-Tunes the Resistance of the Rice Mutant pls4 to Rice Sheath Blight(Rhizotonia solani AG I.1a)
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作者 Shaochun Liu Jiamin Hu +4 位作者 haohua He Junru Fu Xu Jie Dahu Zhou Haihui Fu 《Phyton-International Journal of Experimental Botany》 SCIE 2023年第7期2035-2049,共15页
OsPLS4 encodes aβ-ketoacyl carrier protein reductase(KAR).The role of OsPLS4 in rice sheath blight(Rhizoctonia solani)remains unclear.Our preliminary studies showed that premature leaf senescence mutants(pls4)were hi... OsPLS4 encodes aβ-ketoacyl carrier protein reductase(KAR).The role of OsPLS4 in rice sheath blight(Rhizoctonia solani)remains unclear.Our preliminary studies showed that premature leaf senescence mutants(pls4)were highly susceptive to sheath blight in the early stage of rice development.To explore the role of this gene in the development of rice sheath blight,the transcriptome profiles of the rice pls4 mutant and wild type were compared by RNA-seq.The results revealed 2,569 differentially expressed genes(DEGs).The down-regulated genes were significantly enriched in the defense response-related biological processes.These down-regulated genes included the chitinase genes and WRKY genes,which were significantly changed in pls4 mutants.Furthermore,467 genes induced significant alternative splicing(AS)events.Among them,intron retention(IR)affected gene expression levels and functions of the vitamin B6(VB6)metabolism pathway related to sheath blight.This result suggests that IR plays an important role in the sheath blight resistance of mutant pls4.Together,these results indicate that pls4 could be involved in the biological process of sheath blight via DEGs and the fine-tuning of IR.The present study provides a molecular basis for further investigation of the resistance of rice to sheath blight. 展开更多
关键词 Alternative splicing intron retention RNA-sequencing rice sheath blight vitamin B6 metabolism
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Hawanoids A–E, unprecedented diterpenoids with PAF-induced platelet aggregation inhibitory activities from the deep-sea-derived fungus Paraconiothyrium hawaiiense
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作者 Shushuai Chen Hongxin Liu +7 位作者 Saini Li Yuchan Chen Wei Ye haohua Li Haibo Tan Dongli Li Zhaoming Liu Weimin Zhang 《Chinese Chemical Letters》 SCIE CAS CSCD 2023年第2期416-419,共4页
Hawanoids A–E(1–5), five highly cyclized diterpenoids were isolated from the deep-sea-derived fungus Paraconiothyrium hawaiiense FS482. Compounds 1 and 2 possessed an unprecedented tetracyclo[6.6.2.0^(2,7).0^(11,15)... Hawanoids A–E(1–5), five highly cyclized diterpenoids were isolated from the deep-sea-derived fungus Paraconiothyrium hawaiiense FS482. Compounds 1 and 2 possessed an unprecedented tetracyclo[6.6.2.0^(2,7).0^(11,15)]cetane carbon skeleton while 3 and 4 possessed an unusual 11,14-macrocyclic ether moiety in phomactin family. Their structures including the stereo-chemistry were determined through spectroscopic analysis, X-ray diffractions and computational calculations. The plausible biosynthetic pathway was proposed based on the predicted biosynthetic gene cluster. All of the isolated compounds exhibited inhibitory activities against PAF-induced platelet aggregation. The molecular docking study was carried out understand the interaction between the PAF receptor and hawanoids with different skeletons. 展开更多
关键词 DITERPENOIDS Deep-sea-derived fungus Biosynthetic pathway Platelet aggregation inhibition Molecular docking
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USH2A mutation and specific driver mutation subtypes are associated with clinical efficacy of immune checkpoint inhibitors in lung cancer
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作者 DEXIN YANG YUQIN FENG +6 位作者 haohua LU KELIE CHEN JINMING XU PEIWEI LI TIANRU WANG DAJING XIA YIHUA WU 《Journal of Zhejiang University-Science B(Biomedicine & Biotechnology)》 SCIE CAS CSCD 2023年第2期143-156,共14页
This study aimed to identify subtypes of genomic variants associated with the efficacy of immune checkpoint inhibitors(ICIs)by conducting systematic literature search in electronic databases up to May 31,2021.The main... This study aimed to identify subtypes of genomic variants associated with the efficacy of immune checkpoint inhibitors(ICIs)by conducting systematic literature search in electronic databases up to May 31,2021.The main outcomes including overall survival(OS),progression-free survival(PFS),objective response rate(ORR),and durable clinical benefit(DCB)were correlated with tumor genomic features.A total of 1546 lung cancer patients with available genomic variation data were included from 14 studies.The Kirsten rat sarcoma viral oncogene homolog G12C(KRAS^(G12C))mutation combined with tumor protein P53(TP53)mutation revealed the promising efficacy of ICI therapy in these patients.Furthermore,patients with epidermal growth factor receptor(EGFR)classical activating mutations(including EGFRL858Rand EGFRΔ19)exhibited worse outcomes to ICIs in OS(adjusted hazard ratio(HR),1.40;95%confidence interval(CI),1.01-1.95;P=0.0411)and PFS(adjusted HR,1.98;95%CI,1.49-2.63;P<0.0001),while classical activating mutations with EGFR^(T790)Mshowed no difference compared to classical activating mutations without EGFR^(T790)Min OS(adjusted HR,0.96;95%CI,0.48-1.94;P=0.9157)or PFS(adjusted HR,0.72;95%CI,0.39-1.35;P=0.3050).Of note,for patients harboring the Usher syndrome type-2A(USH2A)missense mutation,correspondingly better outcomes were observed in OS(adjusted HR,0.52;95%CI,0.32-0.82;P=0.0077),PFS(adjusted HR,0.51;95%CI,0.38-0.69;P<0.0001),DCB(adjusted odds ratio(OR),4.74;95%CI,2.75-8.17;P<0.0001),and ORR(adjusted OR,3.45;95%CI,1.88-6.33;P<0.0001).Our findings indicated that,USH2A missense mutations and the KRAS^(G12C)mutation combined with TP53 mutation were associated with better efficacy and survival outcomes,but EGFR classical mutations irrespective of combination with EGFR^(T790)Mshowed the opposite role in the ICI therapy among lung cancer patients.Our findings might guide the selection of precise targets for effective immunotherapy in the clinic. 展开更多
关键词 Immune checkpoint inhibitor(ICI) Lung cancer Usher syndrome type-2A(USH2A)missense mutation Kirsten rat sarcoma viral oncogene homolog G12C(KRAS^(G12C))mutation combined with tumor protein P53(TP53)mutation Epidermal growth factor receptor(EGFR)mutation
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An Optimization System for Intent Recognition Based on an Improved KNN Algorithm with Minimal Feature Set for Powered Knee Prosthesis
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作者 Yao Zhang Xu Wang +6 位作者 haohua Xiu Lei Ren Yang Han Yongxin Ma Wei Chen Guowu Wei Luquan Ren 《Journal of Bionic Engineering》 SCIE EI CSCD 2023年第6期2619-2632,共14页
In this article,a new optimization system that uses few features to recognize locomotion with high classification accuracy is proposed.The optimization system consists of three parts.First,the features of the mixed me... In this article,a new optimization system that uses few features to recognize locomotion with high classification accuracy is proposed.The optimization system consists of three parts.First,the features of the mixed mechanical signal data are extracted from each analysis window of 200 ms after each foot contact event.Then,the Binary version of the hybrid Gray Wolf Optimization and Particle Swarm Optimization(BGWOPSO)algorithm is used to select features.And,the selected features are optimized and assigned different weights by the Biogeography-Based Optimization(BBO)algorithm.Finally,an improved K-Nearest Neighbor(KNN)classifier is employed for intention recognition.This classifier has the advantages of high accuracy,few parameters as well as low memory burden.Based on data from eight patients with transfemoral amputations,the optimization system is evaluated.The numerical results indicate that the proposed model can recognize nine daily locomotion modes(i.e.,low-,mid-,and fast-speed level-ground walking,ramp ascent/decent,stair ascent/descent,and sit/stand)by only seven features,with an accuracy of 96.66%±0.68%.As for real-time prediction on a powered knee prosthesis,the shortest prediction time is only 9.8 ms.These promising results reveal the potential of intention recognition based on the proposed system for high-level control of the prosthetic knee. 展开更多
关键词 Intent recognition K-Nearest Neighbor algorithm Powered knee prosthesis Locomotion mode classification
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Effect of microbial agent ARC-BBBE demonstration application on peanut production in the Huang-huai-hai area of China
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作者 Pingping Ji haohua Gu +5 位作者 Mingbo Wen Hang Cai Jiaming Zhu Xiaofeng Yue Qi Zhang Peiwu Li 《Oil Crop Science》 CSCD 2023年第3期143-148,共6页
The microbial agent ARC-BBBE demonstration trials were conducted in four provinces in the main peanutproducing areas of the Huang-huai-hai plain of China.The results revealed that the application of ARC-BBBE led to a ... The microbial agent ARC-BBBE demonstration trials were conducted in four provinces in the main peanutproducing areas of the Huang-huai-hai plain of China.The results revealed that the application of ARC-BBBE led to a 1.09–1.70 fold increase in the number of nodules in the treatment group at the demonstration site compared to the control group.Moreover,the nodule weight in the treatment group was 0.80–3.32 times higher than that of the control group,and nitrogenase activity per plant showed a significant enhancement by 1.00–2.83 fold compared to controls.Additionally,notable improvements were observed in terms of increased fresh weight of whole plants,well-filled pod numbers,and enhanced growth performance;ultimately resulting in a harvest yield increase ranging from 9.46%to 49.04%.The abundance of Aspergillus flavus in rhizosphere soil was determined by the dilution spread plate method,and the inhibition rate was up to 86.7%.The application of ARC-BBBE in the significant peanut-producing areas of Huang-huai-hai has effects of promoting growth,nodulation,and increasing production.At the same time,it has the effect of inhibiting and controlling soil Aspergillus flavus,which provides a new green and low-carbon way to promote the high-quality development of the peanut industry. 展开更多
关键词 Microbial agent ARC-BBBE PEANUT Nitrogenase activity Aspergillus flavus PRODUCTION
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